Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 3-370
Cow position: chr25:25288932-25288578 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 255
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 202, 42

Conread position: 6-566
Cow position: chr25:41407041-41406479 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 373
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 143, 33

Conread position: 10-566
Cow position: chr25:13692693-13693269 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 11-565
Cow position: chr25:34345033-34345600 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 367
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 149, 56

Conread position: 16-205
Cow position: chr25:16448696-16448888 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 38

Conread position: 16-345
Cow position: chr25:18191688-18192022 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 20, 27

Conread position: 16-406
Cow position: chr25:30313488-30313877 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 267
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 27, 23

Conread position: 16-550
Cow position: chr25:19922514-19921958 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 347
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 20, 27

Conread position: 16-563
Cow position: chr25:20631591-20631026 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 28

Conread position: 16-565
Cow position: chr25:12940706-12941271 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 23

Conread position: 16-565
Cow position: chr25:18887776-18888344 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 28

Conread position: 16-565
Cow position: chr25:25508670-25508106 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 381
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 27

Conread position: 16-566
Cow position: chr25:19338632-19339199 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-585
Cow position: chr25:11042312-11041738 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 124

Conread position: 16-600
Cow position: chr25:18306114-18305506 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 399
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 20, 27

Conread position: 17-585
Cow position: chr25:13783014-13782428 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 18-352
Cow position: chr25:35588368-35588712 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 45

Conread position: 18-557
Cow position: chr25:30148764-30149303 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 45

Conread position: 18-565
Cow position: chr25:18280838-18281367 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 45

Conread position: 43-568
Cow position: chr25:24055548-24055021 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 352
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 46

Conread position: 47-410
Cow position: chr25:19018257-19018621 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 114, 16

Conread position: 49-455
Cow position: chr25:33209211-33209629 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 275
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 110, 36

Conread position: 54-331
Cow position: chr25:30285652-30285929 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 24

Conread position: 56-561
Cow position: chr25:23847315-23847809 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 49

Conread position: 57-585
Cow position: chr25:24215573-24216114 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 357
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 92, 80

Conread position: 59-565
Cow position: chr25:17656326-17655831 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 333
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 54

Conread position: 63-368
Cow position: chr25:39555910-39556213 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 202
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 60

Conread position: 63-564
Cow position: chr25:27522707-27523208 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 123

Conread position: 75-557
Cow position: chr25:10943679-10944179 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 332
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 70, 18

Conread position: 89-370
Cow position: chr25:29152163-29152455 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 190
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 106-611
Cow position: chr25:20346103-20346622 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 348
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 31

Conread position: 128-474
Cow position: chr25:20098272-20097914 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 253

Conread position: 159-601
Cow position: chr25:14956664-14957091 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 184

Conread position: 180-550
Cow position: chr25:18451125-18450757 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 147, 34

Conread position: 229-533
Cow position: chr25:32581268-32580953 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 126, 185

Conread position: 229-566
Cow position: chr25:13061964-13062311 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 127, 185

Conread position: 229-620
Cow position: chr25:21545698-21545302 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 269
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 110, 34

Conread position: 230-565
Cow position: chr25:17558820-17559164 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 125, 184

Conread position: 235-576
Cow position: chr25:35020948-35021273 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 117, 7

Conread position: 239-567
Cow position: chr25:4532772-4533105 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 64, 159

Conread position: 241-585
Cow position: chr25:11830378-11830736 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 116, 15

Conread position: 242-566
Cow position: chr25:19998402-19998081 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 215
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 110, 8

Conread position: 245-566
Cow position: chr25:12757392-12757721 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 113, 163

Conread position: 247-567
Cow position: chr25:30165378-30165694 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 32

Conread position: 256-590
Cow position: chr25:22149260-22148916 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 158

Conread position: 259-564
Cow position: chr25:30267206-30266892 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 201
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 21

Conread position: 260-566
Cow position: chr25:35847980-35847678 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 36

Conread position: 263-565
Cow position: chr25:13999464-13999162 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 112

Conread position: 267-563
Cow position: chr25:19408510-19408205 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 141

Conread position: 299-566
Cow position: chr25:13793756-13794032 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 104

Conread position: 300-564
Cow position: chr25:21902710-21902434 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 58, 104

Conread position: 319-560
Cow position: chr25:25543564-25543322 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 89

Conread position: 321-566
Cow position: chr25:20773735-20773972 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 32

Conread position: 368-571
Cow position: chr25:30756890-30757084 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 191, 14

Conread position: 542-816
Cow position: chr25:7750683-7750416 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 73

Conread position: 557-792
Cow position: chr25:20203126-20202901 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 558-756
Cow position: chr25:24115095-24115292 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 60

Conread position: 559-783
Cow position: chr25:8347870-8347649 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 62

Conread position: 559-811
Cow position: chr25:20008357-20008101 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 68

Conread position: 559-816
Cow position: chr25:28597387-28597648 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 62

Conread position: 560-806
Cow position: chr25:22315420-22315179 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 560-813
Cow position: chr25:26136603-26136856 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 62

Conread position: 562-769
Cow position: chr25:1802824-1802622 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 562-806
Cow position: chr25:35762801-35762565 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 160, 11

Conread position: 562-806
Cow position: chr25:40682953-40682712 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 61

Conread position: 571-795
Cow position: chr25:41150758-41150981 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 51

Conread position: 573-815
Cow position: chr25:16921590-16921833 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 48

Conread position: 573-816
Cow position: chr25:18288567-18288805 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 235, 48

Conread position: 573-816
Cow position: chr25:33457933-33457696 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 49

Conread position: 574-805
Cow position: chr25:7008123-7007887 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 48

Conread position: 574-812
Cow position: chr25:33550712-33550477 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 14

Conread position: 576-806
Cow position: chr25:26679428-26679200 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 46

Conread position: 576-812
Cow position: chr25:22348257-22348495 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 10, 46

Conread position: 577-769
Cow position: chr25:7684699-7684887 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 16

Conread position: 579-812
Cow position: chr25:22756809-22756576 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 107, 42

Conread position: 582-804
Cow position: chr25:7673501-7673271 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 582-816
Cow position: chr25:19130048-19129819 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 589-813
Cow position: chr25:36835245-36835463 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 20

Conread position: 590-811
Cow position: chr25:9989916-9990141 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 31

Conread position: 590-814
Cow position: chr25:11432766-11432979 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 590-816
Cow position: chr25:26306017-26306240 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 591-804
Cow position: chr25:36873152-36873357 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 591-806
Cow position: chr25:35339005-35339216 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 114, 30

Conread position: 591-815
Cow position: chr25:19363875-19364094 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 30, 0

Conread position: 591-816
Cow position: chr25:13443222-13443446 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 30

Conread position: 592-816
Cow position: chr25:19679536-19679319 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 595-806
Cow position: chr25:36872544-36872332 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 141
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 60, 26

Conread position: 595-815
Cow position: chr25:13223079-13222865 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 600-811
Cow position: chr25:23244828-23245033 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 618-816
Cow position: chr25:15715031-15714837 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 649-808
Cow position: chr25:9843307-9843148 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 658-816
Cow position: chr25:18810467-18810308 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 14, 155

Show alignments to all cow chromosomes.