Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 7-473
Cow position: chr29:18007132-18007619 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 305
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 175

Conread position: 10-455
Cow position: chr29:40611941-40612396 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 13, 30

Conread position: 10-566
Cow position: chr29:10022396-10022972 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr29:21430919-21431491 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 10-566
Cow position: chr29:31183338-31182768 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr29:35298846-35298273 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-623
Cow position: chr29:608712-609338 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 409
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 7, 34

Conread position: 13-414
Cow position: chr29:13075377-13074969 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 260
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 47, 82

Conread position: 16-337
Cow position: chr29:45223300-45222980 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 186, 47

Conread position: 16-370
Cow position: chr29:17407053-17406690 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 27

Conread position: 16-561
Cow position: chr29:32542023-32541466 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 369
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 39, 23

Conread position: 16-561
Cow position: chr29:36596150-36596708 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 16-565
Cow position: chr29:409332-409887 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 360
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 20, 38

Conread position: 16-565
Cow position: chr29:5236955-5236382 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:5980783-5981347 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 367
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 96, 20

Conread position: 16-565
Cow position: chr29:6264074-6264639 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 364
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:14209622-14210187 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 376
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:19621338-19621916 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 378
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 133, 47

Conread position: 16-565
Cow position: chr29:26162907-26163473 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:38228904-38228339 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 374
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:40501085-40501637 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 374
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr29:43325443-43324884 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 47

Conread position: 16-567
Cow position: chr29:13584010-13583441 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 367
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 127, 23

Conread position: 16-568
Cow position: chr29:10821991-10822558 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 370
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 27

Conread position: 16-582
Cow position: chr29:19655547-19654967 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 374
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 27

Conread position: 16-585
Cow position: chr29:2101768-2101181 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-585
Cow position: chr29:13850953-13851532 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 375
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 20, 38

Conread position: 16-585
Cow position: chr29:39077783-39078369 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-595
Cow position: chr29:46533-47120 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 379
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 27

Conread position: 18-565
Cow position: chr29:647734-647174 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 26

Conread position: 18-568
Cow position: chr29:7429193-7429766 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 374
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 25

Conread position: 18-582
Cow position: chr29:19889508-19888927 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 25

Conread position: 53-474
Cow position: chr29:34874918-34874499 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 268
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 108, 185

Conread position: 55-370
Cow position: chr29:15624833-15625156 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 82

Conread position: 55-584
Cow position: chr29:32892660-32892119 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 355
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 179

Conread position: 57-565
Cow position: chr29:14587814-14587280 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 57-566
Cow position: chr29:27179863-27180393 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 57-584
Cow position: chr29:32288136-32287588 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 92

Conread position: 58-368
Cow position: chr29:7088722-7088409 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 221
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 10, 43

Conread position: 58-466
Cow position: chr29:45625277-45624851 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 279
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 97, 36

Conread position: 58-538
Cow position: chr29:9640894-9641399 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 337
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 12, 184

Conread position: 58-561
Cow position: chr29:37165957-37165457 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 82

Conread position: 63-441
Cow position: chr29:22774368-22773994 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 260
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 65

Conread position: 97-543
Cow position: chr29:34586121-34585662 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 324
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 80, 20

Conread position: 107-620
Cow position: chr29:23977963-23977430 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 341
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 129

Conread position: 111-581
Cow position: chr29:3175621-3176089 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 302
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 26

Conread position: 148-373
Cow position: chr29:32555082-32554853 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 95

Conread position: 179-388
Cow position: chr29:42204849-42204645 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 177, 45

Conread position: 180-565
Cow position: chr29:5959326-5958939 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 256
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 176, 44

Conread position: 180-585
Cow position: chr29:17303406-17303017 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 43

Conread position: 181-565
Cow position: chr29:45461496-45461108 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 257
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 152, 43

Conread position: 228-568
Cow position: chr29:9876798-9877153 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 58

Conread position: 229-565
Cow position: chr29:37309441-37309796 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 128, 27

Conread position: 229-566
Cow position: chr29:27979214-27979560 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 144, 184

Conread position: 229-567
Cow position: chr29:23905522-23905192 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 224
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 131, 147

Conread position: 230-355
Cow position: chr29:2073814-2073689 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 234-565
Cow position: chr29:30258850-30259177 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 79, 20

Conread position: 245-586
Cow position: chr29:42528306-42527968 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 228
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 143

Conread position: 247-601
Cow position: chr29:16165936-16166274 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 287, 78

Conread position: 248-561
Cow position: chr29:24335314-24335635 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 55, 213

Conread position: 256-583
Cow position: chr29:14113222-14112888 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 220
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 149

Conread position: 258-564
Cow position: chr29:27262034-27262353 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 268

Conread position: 264-561
Cow position: chr29:4517236-4516928 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 206
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 141

Conread position: 265-547
Cow position: chr29:19601614-19601900 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 7

Conread position: 268-565
Cow position: chr29:15996984-15997289 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 134

Conread position: 289-566
Cow position: chr29:14098394-14098103 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 115

Conread position: 291-557
Cow position: chr29:38713309-38713039 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 12

Conread position: 321-566
Cow position: chr29:29502662-29502899 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 376-566
Cow position: chr29:42093313-42093125 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 383-566
Cow position: chr29:3328880-3328699 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 525-808
Cow position: chr29:22690472-22690197 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 127, 37

Conread position: 544-816
Cow position: chr29:41531084-41530813 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 37

Conread position: 556-812
Cow position: chr29:5063362-5063113 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 556-816
Cow position: chr29:19949524-19949273 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 226, 17

Conread position: 557-811
Cow position: chr29:23874681-23874429 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 130, 23

Conread position: 559-812
Cow position: chr29:39038051-39038301 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 15, 30

Conread position: 559-816
Cow position: chr29:12680376-12680121 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 30

Conread position: 559-816
Cow position: chr29:25944078-25944339 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 13

Conread position: 561-816
Cow position: chr29:36531083-36530831 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 61

Conread position: 564-812
Cow position: chr29:10058330-10058567 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 218, 46

Conread position: 565-806
Cow position: chr29:26540331-26540566 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 115, 17

Conread position: 574-811
Cow position: chr29:9310806-9310569 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 160
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 137, 141

Conread position: 574-816
Cow position: chr29:29923374-29923608 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 575-789
Cow position: chr29:19363909-19363702 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 96, 17

Conread position: 576-805
Cow position: chr29:41112688-41112904 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 46

Conread position: 576-812
Cow position: chr29:20167624-20167392 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 81, 39

Conread position: 581-813
Cow position: chr29:32197891-32197664 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 41

Conread position: 582-811
Cow position: chr29:36357323-36357098 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 589-812
Cow position: chr29:17804718-17804502 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 116, 35

Conread position: 589-814
Cow position: chr29:34358791-34359011 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 8

Conread position: 590-811
Cow position: chr29:15947356-15947136 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 31

Conread position: 591-816
Cow position: chr29:29324234-29324456 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 30

Conread position: 596-812
Cow position: chr29:23825031-23825242 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 618-805
Cow position: chr29:8926287-8926486 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 618-805
Cow position: chr29:22723759-22723576 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 618-811
Cow position: chr29:17110115-17109929 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.