Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1002-1211 |
| Cow position: | chr11:27768835-27769044 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 1004-1202 |
| Cow position: | chr11:48822603-48822808 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1028-1212 |
| Cow position: | chr11:15361210-15361390 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 1028-1212 |
| Cow position: | chr11:40144773-40144592 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 1028-1212 |
| Cow position: | chr11:51020364-51020557 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1029-1210 |
| Cow position: | chr11:55115607-55115425 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 1029-1212 |
| Cow position: | chr11:25379484-25379295 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 1029-1212 |
| Cow position: | chr11:38047199-38047386 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 1030-1177 |
| Cow position: | chr11:32317292-32317140 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1030-1179 |
| Cow position: | chr11:53270458-53270309 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 1030-1195 |
| Cow position: | chr11:48483915-48483743 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1030-1200 |
| Cow position: | chr11:42823330-42823151 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 1030-1201 |
| Cow position: | chr11:28748158-28747978 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 1030-1201 |
| Cow position: | chr11:42682608-42682430 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1202 |
| Cow position: | chr11:9063163-9062991 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 1030-1202 |
| Cow position: | chr11:29014459-29014636 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 1030-1202 |
| Cow position: | chr11:32734393-32734567 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 148, 64 |
| Conread position: | 1030-1202 |
| Cow position: | chr11:80003102-80003280 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 1030-1202 |
| Cow position: | chr11:86925264-86925090 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 1030-1205 |
| Cow position: | chr11:10977543-10977723 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 1030-1205 |
| Cow position: | chr11:31126303-31126485 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1030-1205 |
| Cow position: | chr11:41517779-41517599 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 1030-1205 |
| Cow position: | chr11:74216158-74215978 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 1030-1206 |
| Cow position: | chr11:21849946-21849773 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 15 |
| Conread position: | 1030-1206 |
| Cow position: | chr11:21886477-21886299 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1206 |
| Cow position: | chr11:61754250-61754420 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:7443342-7443161 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:8020013-8020196 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:9550426-9550238 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:27666112-27665924 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:40016851-40017030 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:40050077-40049893 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 1030-1207 |
| Cow position: | chr11:55465025-55464843 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 1030-1208 |
| Cow position: | chr11:12998916-12999106 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1030-1208 |
| Cow position: | chr11:50134104-50133922 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 1030-1208 |
| Cow position: | chr11:60008266-60008453 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1209 |
| Cow position: | chr11:37763834-37764021 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 1030-1209 |
| Cow position: | chr11:81278707-81278888 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 39, 127 |
| Conread position: | 1030-1211 |
| Cow position: | chr11:4484617-4484430 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1030-1211 |
| Cow position: | chr11:35506911-35507089 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 1030-1211 |
| Cow position: | chr11:84829703-84829518 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:6200031-6199847 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:18370976-18371161 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:21525510-21525689 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:24314580-24314766 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:35502517-35502324 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:54668880-54669066 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 1030-1212 |
| Cow position: | chr11:81426789-81426613 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 1031-1207 |
| Cow position: | chr11:54666308-54666127 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 1033-1205 |
| Cow position: | chr11:52027640-52027462 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1034-1209 |
| Cow position: | chr11:12112360-12112536 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 1036-1206 |
| Cow position: | chr11:16653335-16653166 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 1037-1207 |
| Cow position: | chr11:64083175-64083346 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 1040-1209 |
| Cow position: | chr11:57084099-57083920 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1041-1193 |
| Cow position: | chr11:49216843-49216995 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 1041-1207 |
| Cow position: | chr11:45940269-45940094 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1043-1212 |
| Cow position: | chr11:81453650-81453477 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 1044-1202 |
| Cow position: | chr11:13216135-13216293 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 1056-1207 |
| Cow position: | chr11:1111214-1111064 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 1098-1208 |
| Cow position: | chr11:24093477-24093364 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 1109-1212 |
| Cow position: | chr11:61297746-61297644 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.