Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1027-1191 |
| Cow position: | chr13:9343088-9342918 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 1029-1209 |
| Cow position: | chr13:3564197-3564009 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 169 |
| Conread position: | 1030-1145 |
| Cow position: | chr13:62264187-62264306 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1150 |
| Cow position: | chr13:17981668-17981541 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1192 |
| Cow position: | chr13:18052383-18052553 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1194 |
| Cow position: | chr13:1639259-1639429 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 1030-1195 |
| Cow position: | chr13:46131621-46131455 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 39, 138 |
| Conread position: | 1030-1198 |
| Cow position: | chr13:6178459-6178633 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1030-1198 |
| Cow position: | chr13:9716329-9716507 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1030-1200 |
| Cow position: | chr13:1424072-1424253 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 41, 95 |
| Conread position: | 1030-1201 |
| Cow position: | chr13:16342855-16342683 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 1030-1201 |
| Cow position: | chr13:46711033-46711209 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 1030-1202 |
| Cow position: | chr13:11570594-11570413 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 1030-1202 |
| Cow position: | chr13:16040933-16040768 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 1030-1204 |
| Cow position: | chr13:15704355-15704177 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1204 |
| Cow position: | chr13:22459766-22459595 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 1030-1205 |
| Cow position: | chr13:1725676-1725857 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 1030-1205 |
| Cow position: | chr13:17127358-17127178 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 1030-1205 |
| Cow position: | chr13:21677132-21676948 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1206 |
| Cow position: | chr13:4947298-4947111 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr13:25883315-25883496 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 1030-1209 |
| Cow position: | chr13:20490220-20490030 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 166 |
| Conread position: | 1030-1209 |
| Cow position: | chr13:22976886-22976700 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:3167562-3167383 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:5776773-5776957 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:29671717-29671909 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:30772812-30772628 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:41312478-41312293 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:45511226-45511039 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:52833439-52833238 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr13:61121529-61121713 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 148, 67 |
| Conread position: | 1031-1201 |
| Cow position: | chr13:19252125-19252302 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1034-1171 |
| Cow position: | chr13:41902839-41902700 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 1036-1212 |
| Cow position: | chr13:31453817-31453641 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 58, 145 |
| Conread position: | 1037-1202 |
| Cow position: | chr13:19427237-19427405 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 123 |
| Conread position: | 1038-1207 |
| Cow position: | chr13:9167334-9167511 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1038-1209 |
| Cow position: | chr13:17319686-17319507 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 1038-1212 |
| Cow position: | chr13:22014512-22014687 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 1038-1212 |
| Cow position: | chr13:40663050-40662862 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1042-1207 |
| Cow position: | chr13:11921329-11921500 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1046-1202 |
| Cow position: | chr13:37829484-37829637 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 1050-1212 |
| Cow position: | chr13:4498413-4498577 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 1072-1194 |
| Cow position: | chr13:4441405-4441279 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 1072-1195 |
| Cow position: | chr13:32985791-32985919 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 1072-1207 |
| Cow position: | chr13:9147417-9147558 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1072-1209 |
| Cow position: | chr13:48142922-48143061 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.