Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1020-1212 |
| Cow position: | chr16:46450786-46450982 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 1028-1202 |
| Cow position: | chr16:5594286-5594471 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1028-1207 |
| Cow position: | chr16:25894552-25894746 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 5, 97 |
| Conread position: | 1029-1212 |
| Cow position: | chr16:47341417-47341226 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 1030-1177 |
| Cow position: | chr16:45684706-45684859 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1030-1178 |
| Cow position: | chr16:1084356-1084216 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 1030-1194 |
| Cow position: | chr16:15443728-15443890 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 1030-1198 |
| Cow position: | chr16:15093178-15093010 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 1030-1202 |
| Cow position: | chr16:14364814-14364641 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 149 |
| Conread position: | 1030-1202 |
| Cow position: | chr16:47559146-47559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 75 |
| Conread position: | 1030-1204 |
| Cow position: | chr16:28466868-28466688 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 1030-1205 |
| Cow position: | chr16:11295543-11295719 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 1030-1205 |
| Cow position: | chr16:13831533-13831346 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1030-1205 |
| Cow position: | chr16:19342909-19342728 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 1030-1206 |
| Cow position: | chr16:38178823-38179010 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1206 |
| Cow position: | chr16:38883561-38883741 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 1030-1206 |
| Cow position: | chr16:45698530-45698349 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:14325386-14325575 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:17003821-17004006 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:27579439-27579264 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 144, 53 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:28767571-28767748 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:29829143-29828962 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 1030-1207 |
| Cow position: | chr16:42708346-42708156 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1208 |
| Cow position: | chr16:11752056-11752244 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 1030-1209 |
| Cow position: | chr16:5911338-5911525 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1030-1209 |
| Cow position: | chr16:27075563-27075748 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 152 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1211 |
| Cow position: | chr16:44599236-44599414 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 1030-1212 |
| Cow position: | chr16:4573467-4573653 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 88 |
| Conread position: | 1030-1212 |
| Cow position: | chr16:9987892-9987702 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 1030-1212 |
| Cow position: | chr16:20406001-20405811 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 1030-1212 |
| Cow position: | chr16:28850231-28850054 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr16:52731525-52731707 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 112 |
| Conread position: | 1031-1198 |
| Cow position: | chr16:48283416-48283585 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 1031-1212 |
| Cow position: | chr16:16163325-16163141 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 1033-1177 |
| Cow position: | chr16:6204941-6204792 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1033-1202 |
| Cow position: | chr16:12450858-12450688 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 1034-1202 |
| Cow position: | chr16:25937928-25938102 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1034-1207 |
| Cow position: | chr16:13360533-13360714 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 1034-1212 |
| Cow position: | chr16:46029991-46030176 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 1037-1205 |
| Cow position: | chr16:10776025-10775850 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1043-1202 |
| Cow position: | chr16:54295080-54295252 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 1045-1202 |
| Cow position: | chr16:24875010-24874848 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 1045-1212 |
| Cow position: | chr16:21168286-21168456 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 1061-1207 |
| Cow position: | chr16:32585785-32585634 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1077-1208 |
| Cow position: | chr16:9948908-9949039 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 104 |
Show alignments to all cow chromosomes.