Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 998-1212 |
| Cow position: | chr3:34911771-34911989 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 1015-1212 |
| Cow position: | chr3:56024408-56024205 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1026-1207 |
| Cow position: | chr3:67927267-67927452 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 132 |
| Conread position: | 1028-1195 |
| Cow position: | chr3:73827128-73827301 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 93 |
| Conread position: | 1028-1202 |
| Cow position: | chr3:31924552-31924379 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 1028-1202 |
| Cow position: | chr3:63199557-63199731 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 1028-1207 |
| Cow position: | chr3:54479756-54479931 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 1028-1208 |
| Cow position: | chr3:36729726-36729912 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 1028-1212 |
| Cow position: | chr3:40736568-40736381 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 1029-1162 |
| Cow position: | chr3:47117205-47117341 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1030-1166 |
| Cow position: | chr3:56565506-56565645 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1030-1193 |
| Cow position: | chr3:7942139-7941976 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 1030-1195 |
| Cow position: | chr3:16621961-16621799 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 136, 48 |
| Conread position: | 1030-1196 |
| Cow position: | chr3:1498936-1499103 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 1030-1197 |
| Cow position: | chr3:1670545-1670376 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 1030-1199 |
| Cow position: | chr3:16169963-16169789 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 1030-1199 |
| Cow position: | chr3:26888261-26888088 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:8852508-8852686 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:19004716-19004879 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:24261651-24261481 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:24783769-24783947 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:46134828-46134653 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 1030-1202 |
| Cow position: | chr3:74761279-74761460 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 1030-1203 |
| Cow position: | chr3:1750502-1750684 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1203 |
| Cow position: | chr3:33468421-33468241 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1030-1203 |
| Cow position: | chr3:38690950-38690772 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1030-1204 |
| Cow position: | chr3:31812722-31812905 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 1030-1205 |
| Cow position: | chr3:45435219-45435399 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 1030-1205 |
| Cow position: | chr3:61244045-61244222 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 1030-1205 |
| Cow position: | chr3:79691296-79691480 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1206 |
| Cow position: | chr3:3095749-3095582 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 1030-1206 |
| Cow position: | chr3:41316303-41316493 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:15329366-15329182 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 39, 123 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:22866640-22866450 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:37808043-37807867 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 144, 40 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:40000958-40000781 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:41946830-41946648 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:54554498-54554670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 150, 40 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:56499966-56500152 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:63259985-63260162 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:69467467-69467644 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:77065439-77065260 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr3:77067362-77067183 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1030-1208 |
| Cow position: | chr3:7136386-7136209 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 1030-1208 |
| Cow position: | chr3:17681549-17681720 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 1030-1208 |
| Cow position: | chr3:45343382-45343568 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 1030-1210 |
| Cow position: | chr3:19559878-19559692 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 41, 133 |
| Conread position: | 1030-1211 |
| Cow position: | chr3:3584942-3585129 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1030-1211 |
| Cow position: | chr3:54051513-54051333 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1030-1211 |
| Cow position: | chr3:75163156-75162976 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:14239829-14240006 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:18579301-18579490 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:22850638-22850447 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:24646249-24646438 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:41402406-41402598 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:48858124-48858312 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 186 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:55005280-55005463 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:62561029-62561226 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:64184781-64184966 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 149 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:64435769-64435583 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr3:74110391-74110585 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1031-1208 |
| Cow position: | chr3:79916073-79915903 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 1033-1207 |
| Cow position: | chr3:13478584-13478758 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 1033-1212 |
| Cow position: | chr3:32136711-32136532 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 148 |
| Conread position: | 1034-1195 |
| Cow position: | chr3:24869489-24869658 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1036-1206 |
| Cow position: | chr3:48426347-48426167 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 1037-1212 |
| Cow position: | chr3:16885569-16885393 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 1038-1206 |
| Cow position: | chr3:7785840-7785671 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 1038-1207 |
| Cow position: | chr3:72550312-72550491 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1039-1180 |
| Cow position: | chr3:72926190-72926039 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1041-1207 |
| Cow position: | chr3:12852672-12852501 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 1044-1207 |
| Cow position: | chr3:40886340-40886498 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 1045-1202 |
| Cow position: | chr3:7466672-7466507 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 1046-1206 |
| Cow position: | chr3:5535765-5535611 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 1046-1212 |
| Cow position: | chr3:72531674-72531845 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 1059-1208 |
| Cow position: | chr3:26505277-26505123 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1072-1205 |
| Cow position: | chr3:54570725-54570860 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 1072-1212 |
| Cow position: | chr3:26475255-26475391 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 1077-1212 |
| Cow position: | chr3:71223121-71223258 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 1080-1211 |
| Cow position: | chr3:25062190-25062057 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1096-1195 |
| Cow position: | chr3:18447598-18447698 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1096-1212 |
| Cow position: | chr3:49237750-49237632 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1102-1206 |
| Cow position: | chr3:33578190-33578088 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.