Cow genome map

Conread name: Ss1.1-Pig4-TMW8037M09.5

Conread position: 998-1212
Cow position: chr3:34911771-34911989 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 81, 18

Conread position: 1015-1212
Cow position: chr3:56024408-56024205 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 56, 147

Conread position: 1026-1207
Cow position: chr3:67927267-67927452 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 153
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 7, 132

Conread position: 1028-1195
Cow position: chr3:73827128-73827301 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 93

Conread position: 1028-1202
Cow position: chr3:31924552-31924379 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 5, 43

Conread position: 1028-1202
Cow position: chr3:63199557-63199731 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 6, 21

Conread position: 1028-1207
Cow position: chr3:54479756-54479931 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 26

Conread position: 1028-1208
Cow position: chr3:36729726-36729912 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 6, 30

Conread position: 1028-1212
Cow position: chr3:40736568-40736381 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 60

Conread position: 1029-1162
Cow position: chr3:47117205-47117341 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1030-1166
Cow position: chr3:56565506-56565645 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 1030-1193
Cow position: chr3:7942139-7941976 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 119

Conread position: 1030-1195
Cow position: chr3:16621961-16621799 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 136, 48

Conread position: 1030-1196
Cow position: chr3:1498936-1499103 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 60, 40

Conread position: 1030-1197
Cow position: chr3:1670545-1670376 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 66

Conread position: 1030-1199
Cow position: chr3:16169963-16169789 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 40, 105

Conread position: 1030-1199
Cow position: chr3:26888261-26888088 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 47

Conread position: 1030-1202
Cow position: chr3:8852508-8852686 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 81

Conread position: 1030-1202
Cow position: chr3:19004716-19004879 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 39

Conread position: 1030-1202
Cow position: chr3:24261651-24261481 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 9

Conread position: 1030-1202
Cow position: chr3:24783769-24783947 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 15

Conread position: 1030-1202
Cow position: chr3:46134828-46134653 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 105

Conread position: 1030-1202
Cow position: chr3:74761279-74761460 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 9

Conread position: 1030-1203
Cow position: chr3:1750502-1750684 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1030-1203
Cow position: chr3:33468421-33468241 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 41, 14

Conread position: 1030-1203
Cow position: chr3:38690950-38690772 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 58, 0

Conread position: 1030-1204
Cow position: chr3:31812722-31812905 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 93

Conread position: 1030-1205
Cow position: chr3:45435219-45435399 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 41, 128

Conread position: 1030-1205
Cow position: chr3:61244045-61244222 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 152

Conread position: 1030-1205
Cow position: chr3:79691296-79691480 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1030-1206
Cow position: chr3:3095749-3095582 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 42

Conread position: 1030-1206
Cow position: chr3:41316303-41316493 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 87

Conread position: 1030-1207
Cow position: chr3:15329366-15329182 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 39, 123

Conread position: 1030-1207
Cow position: chr3:22866640-22866450 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 9

Conread position: 1030-1207
Cow position: chr3:37808043-37807867 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 144, 40

Conread position: 1030-1207
Cow position: chr3:40000958-40000781 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 64, 84

Conread position: 1030-1207
Cow position: chr3:41946830-41946648 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 52

Conread position: 1030-1207
Cow position: chr3:54554498-54554670 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 150, 40

Conread position: 1030-1207
Cow position: chr3:56499966-56500152 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1030-1207
Cow position: chr3:63259985-63260162 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 52

Conread position: 1030-1207
Cow position: chr3:69467467-69467644 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 64, 51

Conread position: 1030-1207
Cow position: chr3:77065439-77065260 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 1030-1207
Cow position: chr3:77067362-77067183 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 1030-1208
Cow position: chr3:7136386-7136209 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 31

Conread position: 1030-1208
Cow position: chr3:17681549-17681720 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 148, 40

Conread position: 1030-1208
Cow position: chr3:45343382-45343568 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 176

Conread position: 1030-1210
Cow position: chr3:19559878-19559692 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 149
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 41, 133

Conread position: 1030-1211
Cow position: chr3:3584942-3585129 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1030-1211
Cow position: chr3:54051513-54051333 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 55

Conread position: 1030-1211
Cow position: chr3:75163156-75162976 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 71, 40

Conread position: 1030-1212
Cow position: chr3:14239829-14240006 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 1030-1212
Cow position: chr3:18579301-18579490 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1030-1212
Cow position: chr3:22850638-22850447 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 90

Conread position: 1030-1212
Cow position: chr3:24646249-24646438 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1030-1212
Cow position: chr3:41402406-41402598 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 1030-1212
Cow position: chr3:48858124-48858312 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 186

Conread position: 1030-1212
Cow position: chr3:55005280-55005463 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 12

Conread position: 1030-1212
Cow position: chr3:62561029-62561226 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 1030-1212
Cow position: chr3:64184781-64184966 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 149

Conread position: 1030-1212
Cow position: chr3:64435769-64435583 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 1030-1212
Cow position: chr3:74110391-74110585 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 1031-1208
Cow position: chr3:79916073-79915903 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 147, 39

Conread position: 1033-1207
Cow position: chr3:13478584-13478758 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 13

Conread position: 1033-1212
Cow position: chr3:32136711-32136532 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 148

Conread position: 1034-1195
Cow position: chr3:24869489-24869658 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 1036-1206
Cow position: chr3:48426347-48426167 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 123

Conread position: 1037-1212
Cow position: chr3:16885569-16885393 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 143, 47

Conread position: 1038-1206
Cow position: chr3:7785840-7785671 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 25

Conread position: 1038-1207
Cow position: chr3:72550312-72550491 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 1039-1180
Cow position: chr3:72926190-72926039 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 1041-1207
Cow position: chr3:12852672-12852501 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 17

Conread position: 1044-1207
Cow position: chr3:40886340-40886498 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 33, 7

Conread position: 1045-1202
Cow position: chr3:7466672-7466507 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 54

Conread position: 1046-1206
Cow position: chr3:5535765-5535611 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 25, 43

Conread position: 1046-1212
Cow position: chr3:72531674-72531845 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 113

Conread position: 1059-1208
Cow position: chr3:26505277-26505123 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 1072-1205
Cow position: chr3:54570725-54570860 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 46

Conread position: 1072-1212
Cow position: chr3:26475255-26475391 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 21, 55

Conread position: 1077-1212
Cow position: chr3:71223121-71223258 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 44

Conread position: 1080-1211
Cow position: chr3:25062190-25062057 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 1096-1195
Cow position: chr3:18447598-18447698 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 90
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 1096-1212
Cow position: chr3:49237750-49237632 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 78, 0

Conread position: 1102-1206
Cow position: chr3:33578190-33578088 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.