Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1028-1204 |
| Cow position: | chr4:35181478-35181657 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1028-1207 |
| Cow position: | chr4:19151601-19151414 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1028-1208 |
| Cow position: | chr4:29133631-29133457 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1028-1212 |
| Cow position: | chr4:51619483-51619291 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 1028-1212 |
| Cow position: | chr4:67516982-67516811 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 1029-1179 |
| Cow position: | chr4:6381224-6381069 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1029-1203 |
| Cow position: | chr4:37729977-37729798 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1030-1152 |
| Cow position: | chr4:36816766-36816893 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1030-1164 |
| Cow position: | chr4:58801920-58801781 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 1030-1177 |
| Cow position: | chr4:30223232-30223078 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1177 |
| Cow position: | chr4:31773716-31773862 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 1030-1190 |
| Cow position: | chr4:11571290-11571129 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 1030-1193 |
| Cow position: | chr4:26747706-26747538 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 150 |
| Conread position: | 1030-1193 |
| Cow position: | chr4:47409195-47409365 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 1030-1194 |
| Cow position: | chr4:47476782-47476950 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 1030-1196 |
| Cow position: | chr4:24370385-24370211 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1030-1198 |
| Cow position: | chr4:62674343-62674512 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 1030-1199 |
| Cow position: | chr4:56793833-56793659 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 1030-1200 |
| Cow position: | chr4:3245047-3245216 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 151 |
| Conread position: | 1030-1200 |
| Cow position: | chr4:12681696-12681865 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 1030-1200 |
| Cow position: | chr4:56401464-56401296 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 1030-1201 |
| Cow position: | chr4:20291074-20291250 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1030-1201 |
| Cow position: | chr4:27349252-27349423 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 1030-1202 |
| Cow position: | chr4:11543210-11543384 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 1030-1202 |
| Cow position: | chr4:66127274-66127104 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 1030-1203 |
| Cow position: | chr4:14023336-14023168 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:5923084-5922901 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:21050167-21050348 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:38825350-38825166 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:42638194-42638024 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:43395851-43396033 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:46034456-46034637 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 1030-1205 |
| Cow position: | chr4:62733792-62733611 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 1030-1206 |
| Cow position: | chr4:23926699-23926527 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 1030-1206 |
| Cow position: | chr4:54314234-54314062 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 1030-1206 |
| Cow position: | chr4:64697201-64697020 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 177 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:5496152-5496331 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:11653037-11653225 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:13772434-13772257 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:19207443-19207622 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:20464957-20465141 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:21415099-21414917 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:21999917-21999735 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr4:48404184-48403996 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1030-1208 |
| Cow position: | chr4:52706860-52707040 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 1030-1209 |
| Cow position: | chr4:38623646-38623458 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 1030-1209 |
| Cow position: | chr4:65478942-65478764 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:10871346-10871160 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:22567934-22568120 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:24087749-24087936 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:33294944-33294761 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:44635579-44635762 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:44644888-44644697 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:45638581-45638769 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:46151394-46151201 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:51285590-51285778 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 164 |
| Conread position: | 1030-1212 |
| Cow position: | chr4:52579958-52580135 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 1031-1212 |
| Cow position: | chr4:19127773-19127962 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1032-1209 |
| Cow position: | chr4:18521780-18521594 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 1032-1209 |
| Cow position: | chr4:47235679-47235866 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 1036-1212 |
| Cow position: | chr4:5214684-5214861 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 145 |
| Conread position: | 1037-1203 |
| Cow position: | chr4:15120322-15120498 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1040-1206 |
| Cow position: | chr4:28736405-28736576 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1040-1208 |
| Cow position: | chr4:13920028-13919853 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 1041-1211 |
| Cow position: | chr4:19035377-19035553 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 1041-1212 |
| Cow position: | chr4:8615389-8615210 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 1046-1205 |
| Cow position: | chr4:43848152-43847997 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 39 |
| Conread position: | 1051-1207 |
| Cow position: | chr4:13801733-13801577 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 1054-1208 |
| Cow position: | chr4:44735067-44734911 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 1062-1207 |
| Cow position: | chr4:55198330-55198179 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1064-1212 |
| Cow position: | chr4:8795010-8794854 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 1073-1193 |
| Cow position: | chr4:16952448-16952324 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1077-1201 |
| Cow position: | chr4:20622060-20621939 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1092-1212 |
| Cow position: | chr4:47008832-47008948 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.