Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 917-1207 |
| Cow position: | chr6:36918191-36917895 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 1012-1206 |
| Cow position: | chr6:44771239-44771443 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 141 |
| Conread position: | 1028-1195 |
| Cow position: | chr6:1888950-1888774 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 151 |
| Conread position: | 1028-1202 |
| Cow position: | chr6:36273200-36273380 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1028-1206 |
| Cow position: | chr6:18868469-18868284 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 1028-1207 |
| Cow position: | chr6:57776923-57776740 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 132 |
| Conread position: | 1028-1212 |
| Cow position: | chr6:20406990-20407188 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1028-1212 |
| Cow position: | chr6:55450641-55450453 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1029-1203 |
| Cow position: | chr6:62789443-62789626 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 1029-1207 |
| Cow position: | chr6:52121781-52121961 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 1030-1172 |
| Cow position: | chr6:1562240-1562387 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 1030-1172 |
| Cow position: | chr6:47156425-47156573 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1197 |
| Cow position: | chr6:30945923-30945754 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 154, 40 |
| Conread position: | 1030-1200 |
| Cow position: | chr6:42574721-42574889 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 1030-1201 |
| Cow position: | chr6:6078865-6078694 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1030-1201 |
| Cow position: | chr6:46557277-46557091 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 1030-1202 |
| Cow position: | chr6:2819703-2819513 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1202 |
| Cow position: | chr6:6164763-6164944 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 1030-1202 |
| Cow position: | chr6:17799020-17798843 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 1030-1205 |
| Cow position: | chr6:49752137-49752304 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 1030-1206 |
| Cow position: | chr6:14098361-14098536 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 1030-1206 |
| Cow position: | chr6:30344916-30345096 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 1030-1206 |
| Cow position: | chr6:47134219-47134399 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 1030-1206 |
| Cow position: | chr6:55326421-55326245 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 144, 49 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:493530-493713 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:14937708-14937524 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:31207157-31206976 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:33546429-33546614 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:40157054-40156872 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:59276764-59276581 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 1030-1207 |
| Cow position: | chr6:59330324-59330139 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 1030-1209 |
| Cow position: | chr6:419460-419289 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 61, 103 |
| Conread position: | 1030-1209 |
| Cow position: | chr6:5516907-5516721 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1209 |
| Cow position: | chr6:56367938-56367762 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 1030-1210 |
| Cow position: | chr6:3434509-3434691 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 1030-1210 |
| Cow position: | chr6:37854479-37854662 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 117 |
| Conread position: | 1030-1211 |
| Cow position: | chr6:4728808-4728622 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 110 |
| Conread position: | 1030-1211 |
| Cow position: | chr6:30499246-30499439 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:14931675-14931494 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:19444183-19444356 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:22590168-22590355 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:30892527-30892339 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:46627430-46627618 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:51111335-51111520 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:54634238-54634053 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:57046677-57046497 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 1030-1212 |
| Cow position: | chr6:59068526-59068336 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1031-1193 |
| Cow position: | chr6:49821656-49821827 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 1031-1208 |
| Cow position: | chr6:8565311-8565483 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 1032-1154 |
| Cow position: | chr6:16252308-16252433 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 1032-1162 |
| Cow position: | chr6:2665332-2665198 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 1033-1198 |
| Cow position: | chr6:50972904-50972732 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 1033-1203 |
| Cow position: | chr6:66320596-66320773 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1034-1212 |
| Cow position: | chr6:34778242-34778428 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1035-1207 |
| Cow position: | chr6:37644675-37644854 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 139 |
| Conread position: | 1037-1206 |
| Cow position: | chr6:36017307-36017120 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1040-1212 |
| Cow position: | chr6:15749468-15749292 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 1040-1212 |
| Cow position: | chr6:35406900-35406720 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1046-1202 |
| Cow position: | chr6:1183137-1183299 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1046-1211 |
| Cow position: | chr6:54565056-54565226 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 1046-1212 |
| Cow position: | chr6:30890801-30890626 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 1049-1207 |
| Cow position: | chr6:9470263-9470430 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1077-1200 |
| Cow position: | chr6:12428431-12428303 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 1079-1205 |
| Cow position: | chr6:2639852-2639721 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1086-1208 |
| Cow position: | chr6:53359266-53359391 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1089-1205 |
| Cow position: | chr6:16412932-16412818 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.