Cow genome map

Conread name: Ss1.1-Pig4-TMW8037M09.5

Conread position: 917-1207
Cow position: chr6:36918191-36917895 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 45, 7

Conread position: 1012-1206
Cow position: chr6:44771239-44771443 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 141

Conread position: 1028-1195
Cow position: chr6:1888950-1888774 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 151

Conread position: 1028-1202
Cow position: chr6:36273200-36273380 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 18

Conread position: 1028-1206
Cow position: chr6:18868469-18868284 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 98

Conread position: 1028-1207
Cow position: chr6:57776923-57776740 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 132

Conread position: 1028-1212
Cow position: chr6:20406990-20407188 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 1028-1212
Cow position: chr6:55450641-55450453 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 41, 20

Conread position: 1029-1203
Cow position: chr6:62789443-62789626 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 120

Conread position: 1029-1207
Cow position: chr6:52121781-52121961 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 85

Conread position: 1030-1172
Cow position: chr6:1562240-1562387 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 27

Conread position: 1030-1172
Cow position: chr6:47156425-47156573 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1030-1197
Cow position: chr6:30945923-30945754 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 154, 40

Conread position: 1030-1200
Cow position: chr6:42574721-42574889 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 65

Conread position: 1030-1201
Cow position: chr6:6078865-6078694 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 14

Conread position: 1030-1201
Cow position: chr6:46557277-46557091 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 92

Conread position: 1030-1202
Cow position: chr6:2819703-2819513 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 1030-1202
Cow position: chr6:6164763-6164944 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 65

Conread position: 1030-1202
Cow position: chr6:17799020-17798843 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 80

Conread position: 1030-1205
Cow position: chr6:49752137-49752304 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 40

Conread position: 1030-1206
Cow position: chr6:14098361-14098536 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 64, 40

Conread position: 1030-1206
Cow position: chr6:30344916-30345096 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 83

Conread position: 1030-1206
Cow position: chr6:47134219-47134399 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 28

Conread position: 1030-1206
Cow position: chr6:55326421-55326245 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 144, 49

Conread position: 1030-1207
Cow position: chr6:493530-493713 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 1030-1207
Cow position: chr6:14937708-14937524 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 16

Conread position: 1030-1207
Cow position: chr6:31207157-31206976 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 57, 0

Conread position: 1030-1207
Cow position: chr6:33546429-33546614 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 1030-1207
Cow position: chr6:40157054-40156872 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 150
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 63, 0

Conread position: 1030-1207
Cow position: chr6:59276764-59276581 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 41, 89

Conread position: 1030-1207
Cow position: chr6:59330324-59330139 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 46, 27

Conread position: 1030-1209
Cow position: chr6:419460-419289 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 61, 103

Conread position: 1030-1209
Cow position: chr6:5516907-5516721 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 150
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 0

Conread position: 1030-1209
Cow position: chr6:56367938-56367762 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 63

Conread position: 1030-1210
Cow position: chr6:3434509-3434691 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 67, 87

Conread position: 1030-1210
Cow position: chr6:37854479-37854662 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 39, 117

Conread position: 1030-1211
Cow position: chr6:4728808-4728622 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 110

Conread position: 1030-1211
Cow position: chr6:30499246-30499439 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 107

Conread position: 1030-1212
Cow position: chr6:14931675-14931494 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 74

Conread position: 1030-1212
Cow position: chr6:19444183-19444356 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 31

Conread position: 1030-1212
Cow position: chr6:22590168-22590355 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 50

Conread position: 1030-1212
Cow position: chr6:30892527-30892339 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 41, 86

Conread position: 1030-1212
Cow position: chr6:46627430-46627618 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 40, 104

Conread position: 1030-1212
Cow position: chr6:51111335-51111520 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 21

Conread position: 1030-1212
Cow position: chr6:54634238-54634053 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 68

Conread position: 1030-1212
Cow position: chr6:57046677-57046497 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 123

Conread position: 1030-1212
Cow position: chr6:59068526-59068336 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1031-1193
Cow position: chr6:49821656-49821827 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 88

Conread position: 1031-1208
Cow position: chr6:8565311-8565483 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 40, 13

Conread position: 1032-1154
Cow position: chr6:16252308-16252433 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 97

Conread position: 1032-1162
Cow position: chr6:2665332-2665198 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 99

Conread position: 1033-1198
Cow position: chr6:50972904-50972732 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 123

Conread position: 1033-1203
Cow position: chr6:66320596-66320773 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 1034-1212
Cow position: chr6:34778242-34778428 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 1035-1207
Cow position: chr6:37644675-37644854 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 139

Conread position: 1037-1206
Cow position: chr6:36017307-36017120 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 1040-1212
Cow position: chr6:15749468-15749292 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 65

Conread position: 1040-1212
Cow position: chr6:35406900-35406720 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 1046-1202
Cow position: chr6:1183137-1183299 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 1046-1211
Cow position: chr6:54565056-54565226 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 104

Conread position: 1046-1212
Cow position: chr6:30890801-30890626 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 159

Conread position: 1049-1207
Cow position: chr6:9470263-9470430 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 1077-1200
Cow position: chr6:12428431-12428303 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 14

Conread position: 1079-1205
Cow position: chr6:2639852-2639721 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 1086-1208
Cow position: chr6:53359266-53359391 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 1089-1205
Cow position: chr6:16412932-16412818 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 85, 0

Show alignments to all cow chromosomes.