Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1028-1201 |
| Cow position: | chr9:39646956-39646772 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1028-1205 |
| Cow position: | chr9:41904078-41903903 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 6, 92 |
| Conread position: | 1028-1212 |
| Cow position: | chr9:10311015-10311209 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 1028-1212 |
| Cow position: | chr9:23988863-23988675 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 1029-1211 |
| Cow position: | chr9:26353267-26353462 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1030-1171 |
| Cow position: | chr9:27892632-27892778 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1030-1178 |
| Cow position: | chr9:36089692-36089847 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 1030-1185 |
| Cow position: | chr9:18577237-18577080 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 1030-1188 |
| Cow position: | chr9:10150081-10150245 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1030-1194 |
| Cow position: | chr9:40859716-40859543 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 40 |
| Conread position: | 1030-1202 |
| Cow position: | chr9:16253075-16253243 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 1030-1202 |
| Cow position: | chr9:39236532-39236703 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 1030-1202 |
| Cow position: | chr9:49826558-49826389 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 1030-1205 |
| Cow position: | chr9:24753342-24753172 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1030-1205 |
| Cow position: | chr9:53574397-53574573 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 1030-1205 |
| Cow position: | chr9:56740546-56740719 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 1030-1206 |
| Cow position: | chr9:31968944-31969127 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:3204099-3203913 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:12890138-12889967 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:37256172-37255981 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:38350227-38350045 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:47022505-47022685 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 91 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:54319348-54319525 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 1030-1207 |
| Cow position: | chr9:55262611-55262794 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 1030-1209 |
| Cow position: | chr9:31341026-31340850 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 1030-1209 |
| Cow position: | chr9:47073717-47073899 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 1030-1209 |
| Cow position: | chr9:54717331-54717515 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 1030-1210 |
| Cow position: | chr9:35224588-35224400 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1030-1210 |
| Cow position: | chr9:53532149-53532336 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 1030-1212 |
| Cow position: | chr9:4721283-4721470 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chr9:51159683-51159495 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1031-1209 |
| Cow position: | chr9:963999-964194 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1033-1200 |
| Cow position: | chr9:9784456-9784628 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 148 |
| Conread position: | 1033-1202 |
| Cow position: | chr9:34937523-34937358 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 1033-1205 |
| Cow position: | chr9:49001899-49001723 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 148 |
| Conread position: | 1034-1207 |
| Cow position: | chr9:56023420-56023596 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 1038-1212 |
| Cow position: | chr9:47296650-47296831 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1040-1207 |
| Cow position: | chr9:2710411-2710239 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 1041-1196 |
| Cow position: | chr9:24998086-24998241 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 1041-1207 |
| Cow position: | chr9:15484012-15484185 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 1045-1212 |
| Cow position: | chr9:1976839-1977012 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1050-1212 |
| Cow position: | chr9:15936785-15936618 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 1063-1202 |
| Cow position: | chr9:23596219-23596083 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 1066-1203 |
| Cow position: | chr9:9556243-9556106 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 1072-1212 |
| Cow position: | chr9:4677596-4677742 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1074-1207 |
| Cow position: | chr9:76455-76320 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 1096-1207 |
| Cow position: | chr9:7755389-7755498 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.