Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037M09.5 |
| Conread position: | 1028-1202 |
| Cow position: | chrX:10462731-10462913 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1028-1211 |
| Cow position: | chrX:47314551-47314742 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1030-1177 |
| Cow position: | chrX:38693658-38693809 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 1030-1180 |
| Cow position: | chrX:34424271-34424427 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 1030-1181 |
| Cow position: | chrX:6380920-6381076 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 1030-1190 |
| Cow position: | chrX:263711-263543 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 48, 132 |
| Conread position: | 1030-1190 |
| Cow position: | chrX:40142119-40141953 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 1030-1191 |
| Cow position: | chrX:4794082-4793916 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1191 |
| Cow position: | chrX:21989929-21990086 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 139, 14 |
| Conread position: | 1030-1198 |
| Cow position: | chrX:35695366-35695541 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1030-1202 |
| Cow position: | chrX:21262560-21262393 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 1030-1203 |
| Cow position: | chrX:25261341-25261161 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 1030-1204 |
| Cow position: | chrX:42218968-42219147 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 1030-1205 |
| Cow position: | chrX:30085088-30084907 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 1030-1205 |
| Cow position: | chrX:40342636-40342818 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 130 |
| Conread position: | 1030-1206 |
| Cow position: | chrX:20128773-20128606 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chrX:4629573-4629392 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 1030-1207 |
| Cow position: | chrX:17200817-17201000 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1030-1207 |
| Cow position: | chrX:37139716-37139900 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 93 |
| Conread position: | 1030-1208 |
| Cow position: | chrX:36044305-36044125 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 1030-1209 |
| Cow position: | chrX:20715817-20715633 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1030-1212 |
| Cow position: | chrX:4425077-4425267 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1030-1212 |
| Cow position: | chrX:6570216-6570394 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 148, 35 |
| Conread position: | 1030-1212 |
| Cow position: | chrX:19093934-19093747 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 129 |
| Conread position: | 1030-1212 |
| Cow position: | chrX:27024253-27024428 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 1030-1212 |
| Cow position: | chrX:33772778-33772587 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1031-1200 |
| Cow position: | chrX:31386296-31386471 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 1031-1207 |
| Cow position: | chrX:25707723-25707546 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 1031-1209 |
| Cow position: | chrX:25849027-25849209 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 1033-1186 |
| Cow position: | chrX:34134284-34134437 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 1036-1205 |
| Cow position: | chrX:20562494-20562674 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1038-1212 |
| Cow position: | chrX:33644991-33645172 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1040-1206 |
| Cow position: | chrX:31473814-31473985 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 1040-1209 |
| Cow position: | chrX:12870080-12869902 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1040-1212 |
| Cow position: | chrX:25824173-25823993 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 1041-1207 |
| Cow position: | chrX:19976889-19976709 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 1041-1212 |
| Cow position: | chrX:17264983-17264806 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 1042-1202 |
| Cow position: | chrX:32736189-32736024 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 1049-1207 |
| Cow position: | chrX:4162973-4162814 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 1053-1207 |
| Cow position: | chrX:42529624-42529459 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1060-1202 |
| Cow position: | chrX:32011467-32011319 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 1068-1202 |
| Cow position: | chrX:36029078-36029218 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1071-1212 |
| Cow position: | chrX:9166440-9166295 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1077-1205 |
| Cow position: | chrX:34071858-34071991 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1077-1208 |
| Cow position: | chrX:30958181-30958048 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 1096-1207 |
| Cow position: | chrX:39935946-39935838 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.