Cow genome map

Conread name: Ss1.1-Pig4-TMW8039A22.3

Conread position: 479-697
Cow position: chr1:28879698-28879483 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 201, 13

Conread position: 518-695
Cow position: chr1:99069182-99069365 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 527-690
Cow position: chr1:68371878-68372043 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 45

Conread position: 527-698
Cow position: chr1:8220620-8220447 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 100

Conread position: 528-668
Cow position: chr1:35706271-35706120 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 528-695
Cow position: chr1:67999772-67999600 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 41

Conread position: 528-698
Cow position: chr1:84278248-84278419 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 86

Conread position: 535-695
Cow position: chr1:88278169-88278340 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 535-792
Cow position: chr1:59766679-59766931 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 200, 92

Conread position: 536-674
Cow position: chr1:29256489-29256351 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 536-682
Cow position: chr1:11606231-11606380 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 536-682
Cow position: chr1:20075406-20075260 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 11

Conread position: 536-682
Cow position: chr1:63050657-63050504 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 536-694
Cow position: chr1:65775011-65774856 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 536-694
Cow position: chr1:77186609-77186443 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 536-695
Cow position: chr1:5238537-5238380 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 149, 91

Conread position: 536-695
Cow position: chr1:15535290-15535130 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 28, 63

Conread position: 536-695
Cow position: chr1:20957505-20957663 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 71, 11

Conread position: 536-695
Cow position: chr1:64632195-64632039 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 536-695
Cow position: chr1:93834249-93834413 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 19

Conread position: 536-696
Cow position: chr1:15192135-15192294 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 536-698
Cow position: chr1:21015205-21015045 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 536-698
Cow position: chr1:25859000-25858839 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 120, 0

Conread position: 536-698
Cow position: chr1:28041153-28040993 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 536-698
Cow position: chr1:31323959-31324124 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 50

Conread position: 536-698
Cow position: chr1:34286947-34287097 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 98, 19

Conread position: 536-698
Cow position: chr1:49759985-49760154 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 40

Conread position: 536-698
Cow position: chr1:65809561-65809720 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 536-698
Cow position: chr1:66530544-66530704 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 36

Conread position: 536-698
Cow position: chr1:85691073-85690908 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 86

Conread position: 536-698
Cow position: chr1:88636458-88636614 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 67, 50

Conread position: 536-722
Cow position: chr1:82904062-82904257 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 536-742
Cow position: chr1:62136241-62136450 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 176

Conread position: 536-835
Cow position: chr1:17086770-17087050 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 537-682
Cow position: chr1:12975227-12975367 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 537-695
Cow position: chr1:42542564-42542726 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 29, 98

Conread position: 537-698
Cow position: chr1:32663460-32663300 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 65, 49

Conread position: 538-682
Cow position: chr1:45071969-45071825 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 10

Conread position: 538-695
Cow position: chr1:93813759-93813919 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 59, 20

Conread position: 539-695
Cow position: chr1:73039877-73040038 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 113

Conread position: 542-682
Cow position: chr1:91819167-91819024 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 108

Conread position: 543-691
Cow position: chr1:101064059-101063915 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 543-695
Cow position: chr1:41289048-41289199 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 29, 0

Conread position: 543-698
Cow position: chr1:52141729-52141890 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 547-697
Cow position: chr1:99217979-99217826 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 137

Conread position: 547-698
Cow position: chr1:43114084-43114234 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 52, 69

Conread position: 548-695
Cow position: chr1:91729207-91729350 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 45

Conread position: 548-746
Cow position: chr1:23544486-23544682 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 549-742
Cow position: chr1:81000644-81000832 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 161, 55

Conread position: 556-686
Cow position: chr1:93891377-93891511 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 560-694
Cow position: chr1:96626998-96627133 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 561-698
Cow position: chr1:28821496-28821636 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 564-695
Cow position: chr1:98807004-98806871 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 99

Conread position: 574-708
Cow position: chr1:39005757-39005623 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 12

Conread position: 579-695
Cow position: chr1:64498775-64498891 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 60

Show alignments to all cow chromosomes.