Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039A22.3 |
| Conread position: | 523-693 |
| Cow position: | chr11:70517966-70517781 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 525-696 |
| Cow position: | chr11:20587085-20586910 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 134 |
| Conread position: | 528-695 |
| Cow position: | chr11:38992834-38993001 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 61 |
| Conread position: | 528-698 |
| Cow position: | chr11:75396859-75397026 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 532-697 |
| Cow position: | chr11:60676807-60676969 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 534-682 |
| Cow position: | chr11:49707047-49706900 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 534-691 |
| Cow position: | chr11:79929351-79929195 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 534-695 |
| Cow position: | chr11:37632479-37632319 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 535-694 |
| Cow position: | chr11:35277749-35277901 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 535-695 |
| Cow position: | chr11:10281846-10281690 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 535-695 |
| Cow position: | chr11:63175693-63175850 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 536-661 |
| Cow position: | chr11:58395662-58395540 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 536-682 |
| Cow position: | chr11:3754774-3754919 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 115 |
| Conread position: | 536-682 |
| Cow position: | chr11:41400635-41400478 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 536-682 |
| Cow position: | chr11:78992070-78991918 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 536-688 |
| Cow position: | chr11:3485940-3486089 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 536-693 |
| Cow position: | chr11:35466967-35467120 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 536-695 |
| Cow position: | chr11:6707807-6707958 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 536-695 |
| Cow position: | chr11:26334727-26334888 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 536-695 |
| Cow position: | chr11:60967626-60967473 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 536-695 |
| Cow position: | chr11:72854156-72854322 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 536-698 |
| Cow position: | chr11:209354-209198 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 536-698 |
| Cow position: | chr11:41233047-41233213 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 536-785 |
| Cow position: | chr11:75270212-75269962 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 61, 199 |
| Conread position: | 538-682 |
| Cow position: | chr11:81578609-81578754 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 538-689 |
| Cow position: | chr11:48751906-48751752 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 538-695 |
| Cow position: | chr11:73360348-73360181 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 538-698 |
| Cow position: | chr11:80925527-80925370 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 544-698 |
| Cow position: | chr11:8478348-8478199 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 550-695 |
| Cow position: | chr11:52155873-52155730 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 550-698 |
| Cow position: | chr11:17516946-17517099 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 558-690 |
| Cow position: | chr11:56671786-56671654 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-695 |
| Cow position: | chr11:62478335-62478480 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 559-722 |
| Cow position: | chr11:64459764-64459605 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 561-698 |
| Cow position: | chr11:29575826-29575687 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 562-693 |
| Cow position: | chr11:40481186-40481057 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 562-695 |
| Cow position: | chr11:32362603-32362740 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 580-698 |
| Cow position: | chr11:15510714-15510596 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.