Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039A22.3 |
| Conread position: | 42-149 |
| Cow position: | chr13:14121790-14121683 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-335 |
| Cow position: | chr13:14116346-14116158 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-695 |
| Cow position: | chr13:46515569-46515374 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 493-724 |
| Cow position: | chr13:42370431-42370655 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 525-698 |
| Cow position: | chr13:55778581-55778407 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 527-723 |
| Cow position: | chr13:21292450-21292255 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 159 |
| Conread position: | 528-682 |
| Cow position: | chr13:55458922-55459076 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 528-698 |
| Cow position: | chr13:56916131-56916303 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 533-679 |
| Cow position: | chr13:31860336-31860196 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 535-692 |
| Cow position: | chr13:11263207-11263363 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 535-693 |
| Cow position: | chr13:20092172-20092018 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 535-698 |
| Cow position: | chr13:50531980-50531810 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 536-669 |
| Cow position: | chr13:29186063-29186200 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 536-682 |
| Cow position: | chr13:1165678-1165531 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 536-682 |
| Cow position: | chr13:32788599-32788455 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 536-682 |
| Cow position: | chr13:42599153-42599003 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 536-689 |
| Cow position: | chr13:505438-505276 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 536-693 |
| Cow position: | chr13:45230316-45230155 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 536-696 |
| Cow position: | chr13:39745594-39745759 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 536-697 |
| Cow position: | chr13:4074262-4074105 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 536-698 |
| Cow position: | chr13:6639829-6639992 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 536-698 |
| Cow position: | chr13:14824949-14824784 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 536-728 |
| Cow position: | chr13:35694338-35694536 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 536-741 |
| Cow position: | chr13:26484824-26484616 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 184 |
| Conread position: | 537-695 |
| Cow position: | chr13:16136302-16136461 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 538-682 |
| Cow position: | chr13:49623991-49623845 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 538-698 |
| Cow position: | chr13:21042306-21042137 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 539-702 |
| Cow position: | chr13:15371896-15371736 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 136, 49 |
| Conread position: | 543-694 |
| Cow position: | chr13:14527745-14527895 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 543-695 |
| Cow position: | chr13:44586332-44586184 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 543-698 |
| Cow position: | chr13:20296769-20296925 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 543-708 |
| Cow position: | chr13:26210681-26210511 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 544-698 |
| Cow position: | chr13:58440995-58440840 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 548-695 |
| Cow position: | chr13:55817832-55817684 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 558-694 |
| Cow position: | chr13:3338813-3338947 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 560-682 |
| Cow position: | chr13:47295586-47295463 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 561-696 |
| Cow position: | chr13:31841766-31841901 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 120, 65 |
| Conread position: | 562-742 |
| Cow position: | chr13:18850690-18850505 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 151 |
| Conread position: | 565-695 |
| Cow position: | chr13:16925307-16925179 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 566-693 |
| Cow position: | chr13:45171507-45171631 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 568-840 |
| Cow position: | chr13:14068302-14068034 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 569-698 |
| Cow position: | chr13:15604580-15604451 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-742 |
| Cow position: | chr13:42341609-42341779 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 145 |
Show alignments to all cow chromosomes.