Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039A22.3 |
| Conread position: | 518-689 |
| Cow position: | chr6:9821224-9821398 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 522-718 |
| Cow position: | chr6:46657604-46657400 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 162 |
| Conread position: | 525-695 |
| Cow position: | chr6:12499544-12499715 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 167 |
| Conread position: | 535-695 |
| Cow position: | chr6:11755576-11755736 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 535-695 |
| Cow position: | chr6:57370346-57370510 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 535-696 |
| Cow position: | chr6:6348638-6348474 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 535-698 |
| Cow position: | chr6:8140375-8140212 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-698 |
| Cow position: | chr6:9416445-9416279 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 158 |
| Conread position: | 536-668 |
| Cow position: | chr6:5847696-5847561 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 536-682 |
| Cow position: | chr6:38791217-38791071 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 128 |
| Conread position: | 536-690 |
| Cow position: | chr6:38959607-38959762 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 536-691 |
| Cow position: | chr6:12924990-12925148 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:6382453-6382616 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:28182065-28181904 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:35273802-35273642 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 536-695 |
| Cow position: | chr6:49964790-49964940 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:53392301-53392139 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:54051219-54051070 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 536-695 |
| Cow position: | chr6:62096171-62096325 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 536-695 |
| Cow position: | chr6:67793429-67793586 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 536-697 |
| Cow position: | chr6:1525488-1525654 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 536-697 |
| Cow position: | chr6:35235956-35236119 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 536-698 |
| Cow position: | chr6:6663796-6663961 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 536-698 |
| Cow position: | chr6:12849877-12850041 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 152 |
| Conread position: | 536-698 |
| Cow position: | chr6:49494257-49494091 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 536-728 |
| Cow position: | chr6:1438070-1437887 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 536-741 |
| Cow position: | chr6:49221624-49221829 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 537-696 |
| Cow position: | chr6:1840694-1840530 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 537-698 |
| Cow position: | chr6:8007156-8007322 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 153 |
| Conread position: | 538-695 |
| Cow position: | chr6:44703929-44703764 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 543-698 |
| Cow position: | chr6:51082579-51082736 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 544-660 |
| Cow position: | chr6:28995519-28995405 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 552-698 |
| Cow position: | chr6:4514006-4513858 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 554-736 |
| Cow position: | chr6:661884-662070 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 560-682 |
| Cow position: | chr6:60176469-60176344 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 107 |
| Conread position: | 560-695 |
| Cow position: | chr6:3559360-3559226 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 561-698 |
| Cow position: | chr6:57498546-57498406 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 563-698 |
| Cow position: | chr6:5561390-5561526 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 566-698 |
| Cow position: | chr6:488302-488437 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.