Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 85-247
Cow position: chr15:52791785-52791947 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 32

Conread position: 91-245
Cow position: chr15:29927812-29927969 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 91-247
Cow position: chr15:12722932-12723093 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 28, 11

Conread position: 93-245
Cow position: chr15:17124622-17124466 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 106-247
Cow position: chr15:20649429-20649572 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 106-247
Cow position: chr15:39286547-39286404 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 108-247
Cow position: chr15:12913630-12913494 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 26

Conread position: 110-247
Cow position: chr15:17122909-17122777 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 111-247
Cow position: chr15:49483500-49483632 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 112-247
Cow position: chr15:43626335-43626473 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 114-245
Cow position: chr15:25366195-25366059 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 115-247
Cow position: chr15:4500571-4500707 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 116-240
Cow position: chr15:42142746-42142873 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 118-247
Cow position: chr15:7479120-7478992 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 120-245
Cow position: chr15:43634152-43634027 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 46

Conread position: 120-247
Cow position: chr15:16492335-16492459 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 11

Conread position: 120-247
Cow position: chr15:43590090-43590219 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 121-239
Cow position: chr15:42888955-42888836 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 121-243
Cow position: chr15:21710229-21710107 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 29

Conread position: 121-244
Cow position: chr15:16415173-16415298 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 43

Conread position: 121-247
Cow position: chr15:30956448-30956319 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 109

Conread position: 121-247
Cow position: chr15:36793614-36793490 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 40

Conread position: 123-244
Cow position: chr15:26380865-26380743 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 123-245
Cow position: chr15:45544-45422 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 52

Conread position: 123-245
Cow position: chr15:50953784-50953660 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 25

Conread position: 124-242
Cow position: chr15:15147327-15147206 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 124-245
Cow position: chr15:27555772-27555648 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 125-233
Cow position: chr15:32022433-32022323 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 125-237
Cow position: chr15:295435-295321 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 98

Conread position: 125-241
Cow position: chr15:10511913-10512030 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 98

Conread position: 125-243
Cow position: chr15:20566011-20566131 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 125-243
Cow position: chr15:37719704-37719589 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 16, 91

Conread position: 125-244
Cow position: chr15:19554042-19553923 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 95

Conread position: 125-244
Cow position: chr15:26127950-26127825 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 125-244
Cow position: chr15:42380810-42380929 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 36

Conread position: 125-245
Cow position: chr15:36435085-36435207 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr15:36539827-36539946 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 92

Conread position: 125-245
Cow position: chr15:44809949-44810071 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 125-246
Cow position: chr15:26896815-26896691 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 125-247
Cow position: chr15:2968218-2968341 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr15:17084088-17084213 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 125-247
Cow position: chr15:20534570-20534446 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 125-247
Cow position: chr15:21893667-21893783 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 125-247
Cow position: chr15:21941965-21941841 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr15:22444104-22443980 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr15:28924879-28924751 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 81

Conread position: 125-247
Cow position: chr15:36391554-36391678 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr15:36846303-36846180 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr15:36904185-36904310 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr15:39405625-39405748 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 104

Conread position: 125-247
Cow position: chr15:44119586-44119463 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 52

Conread position: 125-247
Cow position: chr15:52728571-52728445 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 125-248
Cow position: chr15:44089281-44089158 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 119

Conread position: 126-246
Cow position: chr15:14760756-14760634 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 126-247
Cow position: chr15:8665722-8665596 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 126-247
Cow position: chr15:35641897-35642019 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 126-247
Cow position: chr15:37717280-37717152 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 127-247
Cow position: chr15:12045655-12045533 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 129-234
Cow position: chr15:25690578-25690684 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 129-244
Cow position: chr15:10246107-10245993 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 91

Conread position: 129-245
Cow position: chr15:51831904-51831787 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 129-247
Cow position: chr15:23572801-23572682 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 129-247
Cow position: chr15:44402063-44401945 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 6, 24

Conread position: 129-247
Cow position: chr15:50552646-50552527 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 129-248
Cow position: chr15:32324320-32324200 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 130-246
Cow position: chr15:38228024-38228140 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 111

Conread position: 131-247
Cow position: chr15:85355-85241 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 131-247
Cow position: chr15:16657360-16657477 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 132-242
Cow position: chr15:38652712-38652601 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 132-243
Cow position: chr15:17233077-17233193 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 132-243
Cow position: chr15:33729776-33729890 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr15:39474044-39473932 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr15:40159757-40159645 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr15:12974225-12974339 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 81

Conread position: 132-244
Cow position: chr15:22938876-22938761 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr15:40562792-40562681 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 84

Conread position: 132-245
Cow position: chr15:4284262-4284376 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr15:8715291-8715180 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 24

Conread position: 132-245
Cow position: chr15:15154190-15154303 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 27

Conread position: 132-245
Cow position: chr15:17621430-17621316 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 108

Conread position: 132-245
Cow position: chr15:26617826-26617941 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 132-245
Cow position: chr15:43827881-43827768 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 83

Conread position: 132-247
Cow position: chr15:1284153-1284266 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 132-247
Cow position: chr15:31929007-31928892 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 76

Conread position: 132-272
Cow position: chr15:28067815-28067677 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 27

Conread position: 133-245
Cow position: chr15:27280529-27280641 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 99

Conread position: 133-245
Cow position: chr15:37237559-37237671 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 96

Conread position: 134-243
Cow position: chr15:608036-608146 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 134-246
Cow position: chr15:43674053-43673941 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 54

Conread position: 134-247
Cow position: chr15:32948603-32948724 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 134-247
Cow position: chr15:41348263-41348378 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 135-247
Cow position: chr15:16667604-16667491 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 135-247
Cow position: chr15:20459417-20459304 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 135-258
Cow position: chr15:21822033-21821909 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 141-247
Cow position: chr15:4138035-4138140 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 141-247
Cow position: chr15:48095257-48095365 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 142-247
Cow position: chr15:4356950-4357052 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 142-247
Cow position: chr15:9465576-9465681 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr15:16644886-16644782 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 144-248
Cow position: chr15:17196049-17196153 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 160-247
Cow position: chr15:32300294-32300381 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.