Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 75-243
Cow position: chr17:7802874-7803045 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 19

Conread position: 93-245
Cow position: chr17:4264507-4264351 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 27

Conread position: 103-243
Cow position: chr17:43323272-43323415 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 105-245
Cow position: chr17:7758025-7758162 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 25

Conread position: 105-247
Cow position: chr17:19471505-19471645 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 17

Conread position: 117-245
Cow position: chr17:25718397-25718269 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 113

Conread position: 118-246
Cow position: chr17:40355510-40355385 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 119-234
Cow position: chr17:1081460-1081344 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 119-245
Cow position: chr17:15883929-15883799 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 110
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 120-208
Cow position: chr17:20789346-20789436 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 120-245
Cow position: chr17:1463076-1463203 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 120-245
Cow position: chr17:10630729-10630855 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 88

Conread position: 120-245
Cow position: chr17:12248981-12249108 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 120-247
Cow position: chr17:5012818-5012949 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 120-247
Cow position: chr17:9770757-9770629 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 101

Conread position: 120-247
Cow position: chr17:18673790-18673914 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 120-247
Cow position: chr17:21181706-21181577 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 120-248
Cow position: chr17:14668759-14668627 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 121-207
Cow position: chr17:6761603-6761691 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 121-244
Cow position: chr17:36814617-36814490 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 121-246
Cow position: chr17:21806202-21806325 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 118, 19

Conread position: 121-247
Cow position: chr17:3387970-3387843 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 14, 112

Conread position: 121-247
Cow position: chr17:20929494-20929367 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 121-247
Cow position: chr17:27795907-27795779 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 96

Conread position: 122-245
Cow position: chr17:35935411-35935287 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 82

Conread position: 122-246
Cow position: chr17:27855304-27855425 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 10

Conread position: 122-247
Cow position: chr17:6767008-6767135 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 122-247
Cow position: chr17:11920913-11921039 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 122-247
Cow position: chr17:14025660-14025784 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 122-247
Cow position: chr17:26072509-26072635 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 122-249
Cow position: chr17:35149279-35149406 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 122-268
Cow position: chr17:35173109-35172968 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 12

Conread position: 123-219
Cow position: chr17:9119817-9119912 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 8

Conread position: 123-243
Cow position: chr17:10221957-10222080 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 123-244
Cow position: chr17:10037658-10037536 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 123-246
Cow position: chr17:26225278-26225154 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 93

Conread position: 123-247
Cow position: chr17:7865074-7864950 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 75

Conread position: 124-246
Cow position: chr17:21959434-21959561 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 124-246
Cow position: chr17:25584493-25584368 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 124-247
Cow position: chr17:952402-952277 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 124-247
Cow position: chr17:4271110-4271237 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 124-247
Cow position: chr17:11618837-11618710 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 124-247
Cow position: chr17:26000368-26000243 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 98

Conread position: 125-234
Cow position: chr17:6787186-6787076 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 125-244
Cow position: chr17:22772876-22772998 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 125-244
Cow position: chr17:34868894-34868772 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr17:12289164-12289281 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 27

Conread position: 125-245
Cow position: chr17:17265884-17266005 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 125-245
Cow position: chr17:25118135-25118012 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 125-246
Cow position: chr17:13414118-13414241 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr17:32027201-32027325 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr17:5048176-5048056 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 18, 27

Conread position: 125-247
Cow position: chr17:9509745-9509870 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 47

Conread position: 125-247
Cow position: chr17:20157854-20157733 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 80

Conread position: 125-247
Cow position: chr17:21236772-21236648 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr17:21972881-21973004 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr17:25467239-25467108 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 125-247
Cow position: chr17:25815844-25815718 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 125-247
Cow position: chr17:26448787-26448668 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 9

Conread position: 125-248
Cow position: chr17:39904723-39904598 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 126-246
Cow position: chr17:7659351-7659477 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 27

Conread position: 127-247
Cow position: chr17:25709961-25709838 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 129-243
Cow position: chr17:15303731-15303846 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 129-245
Cow position: chr17:20359355-20359240 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 94, 11

Conread position: 129-245
Cow position: chr17:26231207-26231082 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 129-245
Cow position: chr17:32220640-32220756 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 103

Conread position: 129-247
Cow position: chr17:9260369-9260486 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 13, 78

Conread position: 129-247
Cow position: chr17:43957903-43957786 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 55

Conread position: 129-263
Cow position: chr17:1466174-1466305 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 23

Conread position: 130-247
Cow position: chr17:24826842-24826960 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-242
Cow position: chr17:25342501-25342610 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 69

Conread position: 132-242
Cow position: chr17:39964117-39964006 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 132-243
Cow position: chr17:31559810-31559699 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 88

Conread position: 132-244
Cow position: chr17:5761910-5762025 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr17:28795741-28795854 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 132-245
Cow position: chr17:4817769-4817655 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr17:15355173-15355059 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr17:24559532-24559418 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr17:24841936-24841823 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 32

Conread position: 132-245
Cow position: chr17:25608278-25608392 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr17:32278665-32278779 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr17:32280907-32280793 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-247
Cow position: chr17:3364828-3364719 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 73

Conread position: 132-247
Cow position: chr17:3517477-3517592 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 15

Conread position: 132-247
Cow position: chr17:19899139-19899018 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-247
Cow position: chr17:26183586-26183470 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 133-245
Cow position: chr17:30156182-30156293 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 50

Conread position: 133-245
Cow position: chr17:32143327-32143214 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 134-244
Cow position: chr17:44797916-44797805 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 134-245
Cow position: chr17:7571343-7571231 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 134-247
Cow position: chr17:22128159-22128048 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 134-247
Cow position: chr17:40673610-40673496 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 137-241
Cow position: chr17:17772184-17772289 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 140-247
Cow position: chr17:28529085-28528979 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 140-249
Cow position: chr17:17822317-17822212 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 141-253
Cow position: chr17:40383977-40384091 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 142-246
Cow position: chr17:25095714-25095610 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr17:5349895-5349998 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 142-247
Cow position: chr17:21777956-21777851 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr17:27292226-27292331 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 143-247
Cow position: chr17:20887249-20887145 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 145-246
Cow position: chr17:31754547-31754649 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 59, 0

Show alignments to all cow chromosomes.