Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 76-239
Cow position: chr18:51643147-51643306 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 132

Conread position: 85-244
Cow position: chr18:37303362-37303207 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 41

Conread position: 93-243
Cow position: chr18:50959697-50959542 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 103-244
Cow position: chr18:32253311-32253455 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 122

Conread position: 120-223
Cow position: chr18:18664185-18664292 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 120-245
Cow position: chr18:29683296-29683420 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 120-246
Cow position: chr18:5632443-5632321 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 16, 88

Conread position: 120-247
Cow position: chr18:52383085-52382956 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 70

Conread position: 120-342
Cow position: chr18:14871427-14871641 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 100

Conread position: 121-247
Cow position: chr18:697043-697170 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 121-247
Cow position: chr18:3709408-3709282 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 64

Conread position: 121-247
Cow position: chr18:56463550-56463679 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 122-235
Cow position: chr18:51396322-51396435 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 21, 98

Conread position: 123-243
Cow position: chr18:20391380-20391261 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 93

Conread position: 123-245
Cow position: chr18:37032006-37031883 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 123-245
Cow position: chr18:47417172-47417051 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 123-247
Cow position: chr18:31556983-31557108 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 123-247
Cow position: chr18:32960255-32960129 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 90

Conread position: 123-247
Cow position: chr18:35950221-35950088 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 123-247
Cow position: chr18:52251679-52251805 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 109
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 124-246
Cow position: chr18:6005326-6005446 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 46

Conread position: 124-247
Cow position: chr18:10214018-10214138 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 90

Conread position: 124-247
Cow position: chr18:24719478-24719365 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 124-247
Cow position: chr18:43283583-43283705 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 62

Conread position: 124-249
Cow position: chr18:39662954-39662827 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 125-239
Cow position: chr18:37160425-37160541 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 125-243
Cow position: chr18:29945708-29945592 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 34

Conread position: 125-243
Cow position: chr18:51976196-51976076 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 91

Conread position: 125-244
Cow position: chr18:4668334-4668454 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 125-244
Cow position: chr18:27079040-27078919 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr18:21528822-21528702 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 95

Conread position: 125-245
Cow position: chr18:45573554-45573434 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 76

Conread position: 125-245
Cow position: chr18:54572116-54572236 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 90

Conread position: 125-246
Cow position: chr18:21969628-21969752 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr18:47175205-47175329 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 125-246
Cow position: chr18:55692991-55692869 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 68

Conread position: 125-247
Cow position: chr18:4718435-4718311 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 30

Conread position: 125-247
Cow position: chr18:7487408-7487284 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr18:7965406-7965281 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 125-247
Cow position: chr18:17195173-17195293 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 92

Conread position: 125-247
Cow position: chr18:23649099-23648974 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr18:45186043-45185924 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 22

Conread position: 125-248
Cow position: chr18:26354868-26354994 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 125-251
Cow position: chr18:8208251-8208377 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 95

Conread position: 126-244
Cow position: chr18:39623977-39623855 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 126-247
Cow position: chr18:4857550-4857672 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 27

Conread position: 126-247
Cow position: chr18:44909224-44909105 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 9, 91

Conread position: 127-243
Cow position: chr18:10668506-10668389 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 46

Conread position: 127-245
Cow position: chr18:35171520-35171402 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 26

Conread position: 127-247
Cow position: chr18:5189521-5189641 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 57

Conread position: 127-247
Cow position: chr18:45903726-45903845 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 80

Conread position: 129-223
Cow position: chr18:30385343-30385439 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 129-244
Cow position: chr18:237945-238061 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 129-245
Cow position: chr18:19796749-19796869 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 129-245
Cow position: chr18:35795052-35795168 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 104

Conread position: 129-247
Cow position: chr18:3164345-3164462 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 36

Conread position: 129-247
Cow position: chr18:22045243-22045362 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 129-247
Cow position: chr18:23446891-23447009 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 88

Conread position: 129-247
Cow position: chr18:34389212-34389332 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 129-333
Cow position: chr18:30676484-30676691 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 124

Conread position: 131-245
Cow position: chr18:39710281-39710161 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 132-243
Cow position: chr18:16659263-16659376 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 99
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr18:23809956-23810064 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 27

Conread position: 132-243
Cow position: chr18:37690316-37690206 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 75

Conread position: 132-244
Cow position: chr18:2144735-2144626 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 84

Conread position: 132-244
Cow position: chr18:29372035-29371922 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr18:19641139-19641026 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 30

Conread position: 132-245
Cow position: chr18:21751545-21751432 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 88

Conread position: 132-245
Cow position: chr18:38211324-38211210 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr18:44514255-44514140 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr18:49970486-49970599 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 32

Conread position: 132-245
Cow position: chr18:52387053-52387166 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 64

Conread position: 132-245
Cow position: chr18:56155681-56155567 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-246
Cow position: chr18:3412529-3412414 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-247
Cow position: chr18:2108413-2108299 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 58

Conread position: 132-247
Cow position: chr18:7956314-7956200 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 33

Conread position: 132-247
Cow position: chr18:23652948-23653066 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 58

Conread position: 132-247
Cow position: chr18:40028389-40028271 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 132-249
Cow position: chr18:39860613-39860730 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 88

Conread position: 133-243
Cow position: chr18:18956718-18956825 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 82

Conread position: 134-247
Cow position: chr18:3180573-3180463 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 80

Conread position: 134-247
Cow position: chr18:3212043-3211930 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 76

Conread position: 134-247
Cow position: chr18:34490444-34490333 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 64

Conread position: 134-247
Cow position: chr18:51757257-51757145 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 79

Conread position: 135-245
Cow position: chr18:35235859-35235969 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 85

Conread position: 136-245
Cow position: chr18:53053068-53053180 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 136-246
Cow position: chr18:25757153-25757263 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 75

Conread position: 137-245
Cow position: chr18:28539950-28540058 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 28

Conread position: 139-247
Cow position: chr18:48112809-48112915 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 141-245
Cow position: chr18:19143815-19143919 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr18:38669669-38669776 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 156-247
Cow position: chr18:23821689-23821780 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 84
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.