Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 82-244
Cow position: chr20:5268543-5268712 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 83-243
Cow position: chr20:20459885-20459721 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 12, 25

Conread position: 91-246
Cow position: chr20:29990165-29990319 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 23

Conread position: 93-246
Cow position: chr20:9033934-9034090 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 97-264
Cow position: chr20:39016593-39016759 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 38, 27

Conread position: 104-244
Cow position: chr20:4566871-4567015 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 139

Conread position: 104-244
Cow position: chr20:20124761-20124903 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 18

Conread position: 104-244
Cow position: chr20:32067222-32067362 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 30

Conread position: 113-247
Cow position: chr20:5365186-5365054 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 120-243
Cow position: chr20:1139511-1139636 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 120-245
Cow position: chr20:28935388-28935515 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 120-247
Cow position: chr20:4944994-4945126 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 121-245
Cow position: chr20:5950386-5950513 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 122-245
Cow position: chr20:29755030-29754906 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 108
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 118

Conread position: 122-245
Cow position: chr20:34251418-34251542 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 122-246
Cow position: chr20:24000025-24000150 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 13

Conread position: 122-247
Cow position: chr20:1824380-1824500 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 86

Conread position: 122-247
Cow position: chr20:37358111-37357984 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 122-247
Cow position: chr20:41704413-41704283 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 123-245
Cow position: chr20:34348961-34349085 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 124-247
Cow position: chr20:34097697-34097825 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 110
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 125-230
Cow position: chr20:36366067-36365963 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 96

Conread position: 125-242
Cow position: chr20:19201783-19201664 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 125-242
Cow position: chr20:28249432-28249313 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 125-244
Cow position: chr20:17733309-17733428 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 17, 11

Conread position: 125-244
Cow position: chr20:40442215-40442336 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 125-245
Cow position: chr20:6054258-6054379 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 54

Conread position: 125-245
Cow position: chr20:6473984-6473863 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 109

Conread position: 125-245
Cow position: chr20:18500779-18500657 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 106
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr20:34083971-34083845 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 120

Conread position: 125-246
Cow position: chr20:5814814-5814695 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 29

Conread position: 125-246
Cow position: chr20:36097772-36097649 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr20:39417654-39417774 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 25

Conread position: 125-247
Cow position: chr20:3141824-3141702 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 10, 38

Conread position: 125-247
Cow position: chr20:4668940-4668826 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 125-247
Cow position: chr20:10200599-10200474 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr20:10486108-10486230 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 95

Conread position: 125-247
Cow position: chr20:14433171-14433293 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 104

Conread position: 125-247
Cow position: chr20:14460633-14460509 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr20:17251968-17251845 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 83

Conread position: 125-247
Cow position: chr20:22851726-22851601 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 125-247
Cow position: chr20:23506184-23506063 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 95, 77

Conread position: 125-247
Cow position: chr20:25021680-25021555 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr20:33557644-33557521 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 35

Conread position: 125-261
Cow position: chr20:24995383-24995514 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 17, 10

Conread position: 126-234
Cow position: chr20:26561966-26562076 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 126-239
Cow position: chr20:33076575-33076688 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 126-246
Cow position: chr20:7416913-7417038 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 126-247
Cow position: chr20:36741709-36741591 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 26

Conread position: 127-242
Cow position: chr20:27323516-27323399 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 127-245
Cow position: chr20:35310576-35310456 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 127-247
Cow position: chr20:34397187-34397309 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 129-236
Cow position: chr20:4891874-4891980 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 78

Conread position: 129-244
Cow position: chr20:24883116-24883233 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 129-245
Cow position: chr20:13829504-13829390 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 12, 30

Conread position: 129-245
Cow position: chr20:34918652-34918535 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 129-247
Cow position: chr20:11008417-11008298 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 132-233
Cow position: chr20:9730245-9730143 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-242
Cow position: chr20:21344711-21344600 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr20:17524516-17524404 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr20:8679419-8679532 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr20:13876468-13876581 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 31

Conread position: 132-245
Cow position: chr20:34202883-34202765 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr20:37609864-37609750 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr20:41323121-41323234 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 29

Conread position: 132-246
Cow position: chr20:33434918-33435031 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 56

Conread position: 132-247
Cow position: chr20:20892435-20892550 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 132-250
Cow position: chr20:17606723-17606842 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-303
Cow position: chr20:3090808-3090977 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 78

Conread position: 134-246
Cow position: chr20:6248360-6248472 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 35

Conread position: 134-247
Cow position: chr20:297765-297880 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 134-247
Cow position: chr20:11909446-11909559 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 8, 18

Conread position: 134-247
Cow position: chr20:14283162-14283048 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 138-247
Cow position: chr20:26054990-26055099 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 140-245
Cow position: chr20:16291923-16291818 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 141-247
Cow position: chr20:12126070-12126176 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 142-244
Cow position: chr20:10469275-10469173 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 143-247
Cow position: chr20:34410475-34410578 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 145-243
Cow position: chr20:33067132-33067228 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 88, 73

Conread position: 145-247
Cow position: chr20:354671-354773 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.