Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 104-247
Cow position: chr21:17184207-17184066 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 31

Conread position: 110-245
Cow position: chr21:41621413-41621276 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 118-247
Cow position: chr21:26828694-26828825 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 119-247
Cow position: chr21:29418844-29418717 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 120-245
Cow position: chr21:1464618-1464494 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 33

Conread position: 120-245
Cow position: chr21:8494916-8494791 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 109, 119

Conread position: 120-247
Cow position: chr21:3178119-3177996 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 23, 32

Conread position: 120-247
Cow position: chr21:4109051-4108924 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 72

Conread position: 120-250
Cow position: chr21:38918478-38918345 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 128

Conread position: 120-276
Cow position: chr21:36763336-36763182 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 87

Conread position: 121-241
Cow position: chr21:28955893-28955775 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 83

Conread position: 121-245
Cow position: chr21:34209741-34209865 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 51

Conread position: 121-246
Cow position: chr21:48242777-48242906 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 121-247
Cow position: chr21:7535270-7535397 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 56

Conread position: 121-247
Cow position: chr21:8430822-8430951 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 121-247
Cow position: chr21:42227423-42227550 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 67

Conread position: 122-246
Cow position: chr21:18568365-18568489 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 93

Conread position: 122-247
Cow position: chr21:14464855-14464732 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 122-247
Cow position: chr21:37706137-37706266 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 122-247
Cow position: chr21:40266397-40266270 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 122-247
Cow position: chr21:49699765-49699891 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 123-245
Cow position: chr21:3135595-3135718 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 44

Conread position: 123-246
Cow position: chr21:29658545-29658425 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 93

Conread position: 123-247
Cow position: chr21:8545752-8545874 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 123-247
Cow position: chr21:29011705-29011824 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 92

Conread position: 124-246
Cow position: chr21:38482654-38482529 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 81

Conread position: 124-247
Cow position: chr21:5489020-5488898 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 77

Conread position: 124-247
Cow position: chr21:27521070-27521191 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 28

Conread position: 124-247
Cow position: chr21:37014156-37014279 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 124-247
Cow position: chr21:48482260-48482381 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 73

Conread position: 125-231
Cow position: chr21:49627290-49627396 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 125-242
Cow position: chr21:42501321-42501204 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 95

Conread position: 125-243
Cow position: chr21:27677752-27677633 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 103
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 125-243
Cow position: chr21:44251571-44251690 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 38

Conread position: 125-244
Cow position: chr21:49144729-49144851 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 125-245
Cow position: chr21:13134866-13134751 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 40

Conread position: 125-245
Cow position: chr21:16099290-16099414 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr21:16797121-16797002 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 31

Conread position: 125-246
Cow position: chr21:5345151-5345028 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr21:9278798-9278675 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr21:31278458-31278335 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr21:47319-47189 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 125-247
Cow position: chr21:868651-868775 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 10

Conread position: 125-247
Cow position: chr21:6292018-6291895 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr21:10004614-10004737 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 125-247
Cow position: chr21:20160947-20160825 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 39

Conread position: 125-247
Cow position: chr21:27568160-27568043 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 125-247
Cow position: chr21:28882453-28882330 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 91

Conread position: 125-247
Cow position: chr21:30970203-30970084 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 10

Conread position: 125-247
Cow position: chr21:34737431-34737308 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 10, 54

Conread position: 125-247
Cow position: chr21:40475771-40475647 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr21:41829109-41829232 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 125-247
Cow position: chr21:45446807-45446683 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 126-245
Cow position: chr21:19339960-19340081 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 88

Conread position: 127-247
Cow position: chr21:40821627-40821746 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 33

Conread position: 129-239
Cow position: chr21:19236703-19236814 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 129-240
Cow position: chr21:23535978-23535865 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 129-241
Cow position: chr21:20153222-20153108 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 129-243
Cow position: chr21:10264301-10264185 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 129-244
Cow position: chr21:17890568-17890454 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 87

Conread position: 129-244
Cow position: chr21:44829491-44829607 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 129-245
Cow position: chr21:6391607-6391492 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 129-245
Cow position: chr21:11006503-11006619 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 110

Conread position: 129-247
Cow position: chr21:24797920-24797803 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 74

Conread position: 129-247
Cow position: chr21:38943342-38943459 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 6, 53

Conread position: 129-334
Cow position: chr21:32647921-32648129 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 118

Conread position: 130-242
Cow position: chr21:22718519-22718630 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 12, 53

Conread position: 131-246
Cow position: chr21:27711971-27712087 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 132-239
Cow position: chr21:24296503-24296611 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 132-242
Cow position: chr21:13656372-13656483 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr21:785550-785660 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 83

Conread position: 132-243
Cow position: chr21:8713695-8713807 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 132-243
Cow position: chr21:15545100-15545213 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 132-243
Cow position: chr21:20585414-20585525 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 10, 75

Conread position: 132-244
Cow position: chr21:5476844-5476731 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 132-244
Cow position: chr21:12349030-12348917 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr21:44724114-44724221 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 63

Conread position: 132-245
Cow position: chr21:13589024-13588911 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 107

Conread position: 132-245
Cow position: chr21:15305033-15305148 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr21:18578306-18578420 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr21:32392801-32392916 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 132-247
Cow position: chr21:27744291-27744174 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 98

Conread position: 133-244
Cow position: chr21:46809503-46809614 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 54

Conread position: 134-243
Cow position: chr21:25345124-25345014 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 134-247
Cow position: chr21:2536876-2536990 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 134-247
Cow position: chr21:39319150-39319261 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 22

Conread position: 135-247
Cow position: chr21:11353323-11353209 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 135-247
Cow position: chr21:12293282-12293170 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 30

Conread position: 135-247
Cow position: chr21:15444823-15444936 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 98
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 135-254
Cow position: chr21:30231437-30231556 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 114

Conread position: 136-247
Cow position: chr21:24351109-24350996 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 138-244
Cow position: chr21:17929369-17929476 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 141-247
Cow position: chr21:17193496-17193600 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 142-246
Cow position: chr21:14746023-14745919 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr21:24266310-24266417 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 9

Conread position: 142-247
Cow position: chr21:31258720-31258615 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr21:42441881-42441776 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 142-247
Cow position: chr21:45537441-45537334 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 143-244
Cow position: chr21:47784845-47784744 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 144-247
Cow position: chr21:41917990-41918093 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 32

Show alignments to all cow chromosomes.