Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L17.3 |
| Conread position: | 96-247 |
| Cow position: | chr24:20017215-20017367 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 100-244 |
| Cow position: | chr24:23046687-23046834 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 107-213 |
| Cow position: | chr24:33238051-33238162 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 112-247 |
| Cow position: | chr24:5152720-5152584 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 115-245 |
| Cow position: | chr24:11836207-11836341 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 120-232 |
| Cow position: | chr24:30544706-30544817 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 120-244 |
| Cow position: | chr24:885259-885381 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 120-247 |
| Cow position: | chr24:10499404-10499275 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 120-247 |
| Cow position: | chr24:18484809-18484935 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 121-245 |
| Cow position: | chr24:25947674-25947799 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 121-245 |
| Cow position: | chr24:39910845-39910971 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 121-247 |
| Cow position: | chr24:36286749-36286630 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 122-243 |
| Cow position: | chr24:22155515-22155392 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 122-245 |
| Cow position: | chr24:6159460-6159581 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 123-246 |
| Cow position: | chr24:27149568-27149445 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 123-247 |
| Cow position: | chr24:15861407-15861533 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 123-247 |
| Cow position: | chr24:18750894-18750768 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 124-242 |
| Cow position: | chr24:11028503-11028623 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 124-243 |
| Cow position: | chr24:27066414-27066293 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 124-247 |
| Cow position: | chr24:7917195-7917321 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 125-243 |
| Cow position: | chr24:35365523-35365644 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 125-244 |
| Cow position: | chr24:21606493-21606615 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 125-245 |
| Cow position: | chr24:36112-35990 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-245 |
| Cow position: | chr24:162188-162066 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 125-245 |
| Cow position: | chr24:250352-250475 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 125-245 |
| Cow position: | chr24:18324098-18324218 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 125-246 |
| Cow position: | chr24:12241904-12241780 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 125-246 |
| Cow position: | chr24:22420145-22420022 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 125-246 |
| Cow position: | chr24:26880933-26880814 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 125-247 |
| Cow position: | chr24:2261852-2261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 125-247 |
| Cow position: | chr24:13586809-13586930 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 125-247 |
| Cow position: | chr24:18811014-18810892 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 125-247 |
| Cow position: | chr24:27040230-27040108 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-247 |
| Cow position: | chr24:35210240-35210115 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 126-247 |
| Cow position: | chr24:38693696-38693818 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 127-245 |
| Cow position: | chr24:22079642-22079523 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 129-239 |
| Cow position: | chr24:18874643-18874754 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 129-243 |
| Cow position: | chr24:6007995-6008106 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 129-244 |
| Cow position: | chr24:26001565-26001451 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 129-245 |
| Cow position: | chr24:20801168-20801283 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 129-245 |
| Cow position: | chr24:26569636-26569520 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 129-245 |
| Cow position: | chr24:34006028-34006146 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 38 |
| Conread position: | 129-247 |
| Cow position: | chr24:35405188-35405308 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 132-234 |
| Cow position: | chr24:23637628-23637728 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 132-241 |
| Cow position: | chr24:10031748-10031640 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 132-242 |
| Cow position: | chr24:19000217-19000105 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-244 |
| Cow position: | chr24:16641087-16640974 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 132-244 |
| Cow position: | chr24:18734206-18734318 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 132-245 |
| Cow position: | chr24:16995052-16994944 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 132-245 |
| Cow position: | chr24:18702574-18702461 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 132-246 |
| Cow position: | chr24:12121073-12120958 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-246 |
| Cow position: | chr24:25194440-25194326 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 89 |
| Conread position: | 132-247 |
| Cow position: | chr24:34301863-34301978 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 132-247 |
| Cow position: | chr24:39523276-39523388 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 132-247 |
| Cow position: | chr24:43445837-43445953 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 132-248 |
| Cow position: | chr24:27906612-27906499 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 133-247 |
| Cow position: | chr24:18405107-18405220 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 134-233 |
| Cow position: | chr24:120746-120845 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 134-246 |
| Cow position: | chr24:22567278-22567165 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr24:42862797-42862683 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr24:43027052-43027166 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 134-248 |
| Cow position: | chr24:4634993-4635108 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 135-247 |
| Cow position: | chr24:2992709-2992820 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 139-247 |
| Cow position: | chr24:18741399-18741511 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 141-244 |
| Cow position: | chr24:38427946-38428049 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-247 |
| Cow position: | chr24:26588382-26588281 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 141-247 |
| Cow position: | chr24:44987208-44987314 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-246 |
| Cow position: | chr24:18817552-18817448 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-246 |
| Cow position: | chr24:27271092-27270988 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-247 |
| Cow position: | chr24:35632143-35632041 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 144-247 |
| Cow position: | chr24:42008180-42008078 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 148-247 |
| Cow position: | chr24:29505016-29505115 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.