Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L17.3

Conread position: 81-247
Cow position: chr27:26154024-26154192 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 108-247
Cow position: chr27:20048367-20048505 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 109

Conread position: 120-244
Cow position: chr27:22614598-22614729 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 120-247
Cow position: chr27:7935409-7935286 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 121-207
Cow position: chr27:1789432-1789345 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 121-232
Cow position: chr27:28058181-28058296 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 103

Conread position: 121-247
Cow position: chr27:1353326-1353454 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 121-247
Cow position: chr27:8062605-8062479 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 100

Conread position: 121-247
Cow position: chr27:23128212-23128340 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 122-247
Cow position: chr27:19932813-19932940 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 123-243
Cow position: chr27:28922146-28922025 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 123-245
Cow position: chr27:11982899-11982776 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 123-247
Cow position: chr27:26112169-26112044 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 124-247
Cow position: chr27:18558106-18558232 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 124-247
Cow position: chr27:26121506-26121631 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 94

Conread position: 124-247
Cow position: chr27:26314373-26314252 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 124-247
Cow position: chr27:26437372-26437250 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 94

Conread position: 124-247
Cow position: chr27:28472944-28472819 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 124-247
Cow position: chr27:28896627-28896752 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 124-247
Cow position: chr27:30441450-30441576 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 52

Conread position: 124-247
Cow position: chr27:30914755-30914881 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 124-260
Cow position: chr27:25151839-25151978 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 125-212
Cow position: chr27:19823061-19823149 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 125-235
Cow position: chr27:18543737-18543848 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 91

Conread position: 125-240
Cow position: chr27:27438758-27438641 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 125-240
Cow position: chr27:30374831-30374715 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 125-242
Cow position: chr27:23232662-23232781 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 125-244
Cow position: chr27:9504302-9504424 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 125-245
Cow position: chr27:18791763-18791642 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 125-245
Cow position: chr27:20266475-20266356 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 40

Conread position: 125-246
Cow position: chr27:672414-672538 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 125-246
Cow position: chr27:19653827-19653701 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr27:2592285-2592413 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 125-247
Cow position: chr27:5553220-5553341 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 34

Conread position: 125-247
Cow position: chr27:6924832-6924956 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr27:13875483-13875607 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 125-247
Cow position: chr27:14269580-14269454 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr27:16965324-16965448 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 73

Conread position: 125-247
Cow position: chr27:24303693-24303818 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 10, 35

Conread position: 125-247
Cow position: chr27:26245796-26245672 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 125-247
Cow position: chr27:26317818-26317937 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 125-247
Cow position: chr27:29458080-29458203 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 79

Conread position: 126-246
Cow position: chr27:26481446-26481323 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 127-239
Cow position: chr27:27740540-27740427 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 127-245
Cow position: chr27:31157562-31157681 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 113

Conread position: 129-243
Cow position: chr27:11480883-11480769 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 67

Conread position: 129-244
Cow position: chr27:16275925-16275811 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 97

Conread position: 129-245
Cow position: chr27:20785876-20785993 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 129-245
Cow position: chr27:21978388-21978270 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 112

Conread position: 129-245
Cow position: chr27:26467807-26467689 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 129-247
Cow position: chr27:23994661-23994539 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 129-247
Cow position: chr27:24331469-24331592 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 129-247
Cow position: chr27:31373217-31373098 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 129-253
Cow position: chr27:20045651-20045771 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 30

Conread position: 132-235
Cow position: chr27:31479032-31479137 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-240
Cow position: chr27:11145640-11145745 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 84

Conread position: 132-243
Cow position: chr27:6751936-6752048 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr27:21054215-21054328 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr27:28932044-28931933 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 84

Conread position: 132-244
Cow position: chr27:30868993-30868880 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-244
Cow position: chr27:31443814-31443924 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 27

Conread position: 132-245
Cow position: chr27:10404359-10404245 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr27:11208799-11208685 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr27:19074265-19074152 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 88

Conread position: 132-245
Cow position: chr27:19669047-19668933 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr27:28253994-28254108 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-245
Cow position: chr27:28518054-28518165 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 132-247
Cow position: chr27:19779635-19779748 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 23

Conread position: 132-247
Cow position: chr27:26118255-26118371 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 132-247
Cow position: chr27:26509398-26509282 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 132-247
Cow position: chr27:29816871-29816756 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 51

Conread position: 132-247
Cow position: chr27:30764790-30764907 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 132-248
Cow position: chr27:10323602-10323718 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 56

Conread position: 132-249
Cow position: chr27:29877718-29877600 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 133-245
Cow position: chr27:29308102-29308216 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 101

Conread position: 134-246
Cow position: chr27:10979620-10979733 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 135-247
Cow position: chr27:21951219-21951107 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 82

Conread position: 135-247
Cow position: chr27:27012457-27012570 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 141-246
Cow position: chr27:20612289-20612393 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 142-245
Cow position: chr27:23554560-23554457 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 143-243
Cow position: chr27:13318207-13318107 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 143-247
Cow position: chr27:26188597-26188701 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 144-245
Cow position: chr27:26236099-26236200 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 144-247
Cow position: chr27:24731267-24731164 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 145-247
Cow position: chr27:26624979-26625080 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 148-246
Cow position: chr27:23060341-23060243 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 158-246
Cow position: chr27:17908476-17908388 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.