Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L17.3 |
| Conread position: | 91-247 |
| Cow position: | chr28:32015027-32014874 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 104-247 |
| Cow position: | chr28:26820043-26820191 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 120-247 |
| Cow position: | chr28:16159654-16159781 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 120-247 |
| Cow position: | chr28:26304284-26304153 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 121-245 |
| Cow position: | chr28:18761793-18761918 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 121-247 |
| Cow position: | chr28:7644955-7644831 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 121-247 |
| Cow position: | chr28:13356152-13356281 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 122-246 |
| Cow position: | chr28:13245778-13245652 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 122-247 |
| Cow position: | chr28:117544-117672 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 122-247 |
| Cow position: | chr28:118828-118700 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 122-247 |
| Cow position: | chr28:3725995-3726119 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 122-247 |
| Cow position: | chr28:22182921-22183051 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 122-247 |
| Cow position: | chr28:28765690-28765813 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 123-247 |
| Cow position: | chr28:5436873-5436999 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 124-245 |
| Cow position: | chr28:14242909-14242788 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 124-246 |
| Cow position: | chr28:7697766-7697891 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 124-247 |
| Cow position: | chr28:4022884-4022763 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 124-247 |
| Cow position: | chr28:10480595-10480718 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 124-247 |
| Cow position: | chr28:11562031-11562156 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 124-247 |
| Cow position: | chr28:19015914-19015792 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 124-247 |
| Cow position: | chr28:19994735-19994860 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 124-247 |
| Cow position: | chr28:21118893-21118767 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 125-223 |
| Cow position: | chr28:508176-508080 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 125-243 |
| Cow position: | chr28:27941570-27941689 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 125-244 |
| Cow position: | chr28:10495089-10495208 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 125-244 |
| Cow position: | chr28:13370929-13371048 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 125-245 |
| Cow position: | chr28:6283279-6283399 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 125-245 |
| Cow position: | chr28:8347946-8347823 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 125-245 |
| Cow position: | chr28:27218536-27218414 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 125-246 |
| Cow position: | chr28:6124049-6124171 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 125-246 |
| Cow position: | chr28:17620147-17620271 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:2892467-2892342 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:3311009-3311134 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:4163369-4163493 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:5428548-5428664 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 125-247 |
| Cow position: | chr28:5630310-5630186 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:6301295-6301171 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:6563683-6563807 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr28:10615739-10615856 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 125-247 |
| Cow position: | chr28:11866457-11866575 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 127-244 |
| Cow position: | chr28:751436-751318 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 127-245 |
| Cow position: | chr28:4937030-4937150 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 127-245 |
| Cow position: | chr28:20174046-20173926 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 127-247 |
| Cow position: | chr28:17740033-17739912 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 128-247 |
| Cow position: | chr28:21263361-21263247 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 129-236 |
| Cow position: | chr28:7523209-7523316 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 129-242 |
| Cow position: | chr28:19262378-19262492 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-243 |
| Cow position: | chr28:8716174-8716294 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-244 |
| Cow position: | chr28:15295444-15295329 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 129-244 |
| Cow position: | chr28:16419731-16419618 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 129-245 |
| Cow position: | chr28:6934970-6935087 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-245 |
| Cow position: | chr28:16856900-16857015 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 130-245 |
| Cow position: | chr28:24672473-24672357 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 132-241 |
| Cow position: | chr28:5236077-5235970 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 132-241 |
| Cow position: | chr28:10845305-10845196 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 132-243 |
| Cow position: | chr28:6322021-6321909 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 132-244 |
| Cow position: | chr28:10252712-10252824 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 88 |
| Conread position: | 132-244 |
| Cow position: | chr28:11398591-11398704 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 132-244 |
| Cow position: | chr28:23460347-23460235 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 84 |
| Conread position: | 132-244 |
| Cow position: | chr28:30921854-30921967 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-245 |
| Cow position: | chr28:3484789-3484676 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 132-245 |
| Cow position: | chr28:4282286-4282399 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 88 |
| Conread position: | 132-245 |
| Cow position: | chr28:14657919-14657805 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-245 |
| Cow position: | chr28:34830357-34830246 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 132-247 |
| Cow position: | chr28:4074180-4074059 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-247 |
| Cow position: | chr28:11346286-11346397 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 132-247 |
| Cow position: | chr28:16200537-16200653 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-247 |
| Cow position: | chr28:17680828-17680712 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 134-245 |
| Cow position: | chr28:24767609-24767496 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 134-246 |
| Cow position: | chr28:17737949-17738062 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-246 |
| Cow position: | chr28:19127971-19128084 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 134-247 |
| Cow position: | chr28:3011066-3011180 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr28:5232141-5232028 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 134-247 |
| Cow position: | chr28:8165012-8165126 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr28:9100129-9100016 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 134-247 |
| Cow position: | chr28:13048084-13048194 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 134-277 |
| Cow position: | chr28:16964763-16964907 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 135-247 |
| Cow position: | chr28:5294802-5294912 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 138-244 |
| Cow position: | chr28:10896437-10896328 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 140-245 |
| Cow position: | chr28:27721890-27721785 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-245 |
| Cow position: | chr28:13527391-13527287 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 142-247 |
| Cow position: | chr28:18608173-18608278 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-247 |
| Cow position: | chr28:26743822-26743716 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 144-247 |
| Cow position: | chr28:16450342-16450445 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.