Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L17.3 |
| Conread position: | 66-236 |
| Cow position: | chr29:30920145-30920309 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 80-246 |
| Cow position: | chr29:15947417-15947251 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 94-247 |
| Cow position: | chr29:41094351-41094200 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 95-247 |
| Cow position: | chr29:29057410-29057258 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 105-247 |
| Cow position: | chr29:5046879-5046736 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 108-245 |
| Cow position: | chr29:26017279-26017417 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 109-239 |
| Cow position: | chr29:2744048-2744179 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 111-247 |
| Cow position: | chr29:11081173-11081313 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 112-245 |
| Cow position: | chr29:24605112-24604981 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 115-236 |
| Cow position: | chr29:7452452-7452335 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 118-247 |
| Cow position: | chr29:38754726-38754854 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 119-244 |
| Cow position: | chr29:22018974-22019101 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 120-245 |
| Cow position: | chr29:37618519-37618391 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 121-243 |
| Cow position: | chr29:6716304-6716427 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 121-244 |
| Cow position: | chr29:33321558-33321433 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 121-245 |
| Cow position: | chr29:24971540-24971416 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 121-245 |
| Cow position: | chr29:29183931-29183806 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 121-247 |
| Cow position: | chr29:14577064-14576942 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 122-245 |
| Cow position: | chr29:11894910-11894783 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 122-247 |
| Cow position: | chr29:12025275-12025393 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 123-246 |
| Cow position: | chr29:10994719-10994596 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 123-247 |
| Cow position: | chr29:20644123-20643998 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 124-242 |
| Cow position: | chr29:24119291-24119412 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 124-247 |
| Cow position: | chr29:684972-685095 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 125-243 |
| Cow position: | chr29:16200271-16200391 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-244 |
| Cow position: | chr29:22534169-22534047 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-244 |
| Cow position: | chr29:41844045-41844166 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 125-245 |
| Cow position: | chr29:31835472-31835357 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 125-245 |
| Cow position: | chr29:35281677-35281549 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 125-246 |
| Cow position: | chr29:14375674-14375797 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-246 |
| Cow position: | chr29:14746983-14746864 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 125-246 |
| Cow position: | chr29:26777215-26777092 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-246 |
| Cow position: | chr29:32656641-32656518 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 125-246 |
| Cow position: | chr29:34483421-34483543 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 125-247 |
| Cow position: | chr29:3711581-3711457 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr29:4121061-4120937 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 125-247 |
| Cow position: | chr29:4741183-4741308 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 125-247 |
| Cow position: | chr29:8163623-8163746 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 125-247 |
| Cow position: | chr29:11685374-11685250 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 125-247 |
| Cow position: | chr29:26211258-26211135 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 125-247 |
| Cow position: | chr29:44901456-44901578 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 129-245 |
| Cow position: | chr29:23142132-23142249 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 129-245 |
| Cow position: | chr29:23734886-23735003 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-246 |
| Cow position: | chr29:33577440-33577556 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 129-247 |
| Cow position: | chr29:5520284-5520402 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 129-247 |
| Cow position: | chr29:30441138-30441019 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 129-247 |
| Cow position: | chr29:42405149-42405030 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-260 |
| Cow position: | chr29:9924373-9924510 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 132-236 |
| Cow position: | chr29:22068544-22068649 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-244 |
| Cow position: | chr29:28420954-28420841 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-244 |
| Cow position: | chr29:35259178-35259071 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 132-245 |
| Cow position: | chr29:4648015-4648124 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 132-245 |
| Cow position: | chr29:16735423-16735309 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 132-245 |
| Cow position: | chr29:18449941-18450053 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 89 |
| Conread position: | 132-245 |
| Cow position: | chr29:30227083-30227197 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-247 |
| Cow position: | chr29:4441008-4441122 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 84 |
| Conread position: | 132-247 |
| Cow position: | chr29:17297335-17297219 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-247 |
| Cow position: | chr29:36357325-36357209 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-289 |
| Cow position: | chr29:28727021-28726871 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 133-245 |
| Cow position: | chr29:24187867-24187980 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 133-247 |
| Cow position: | chr29:18878287-18878398 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 134-246 |
| Cow position: | chr29:23819189-23819306 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-246 |
| Cow position: | chr29:23874657-23874544 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-246 |
| Cow position: | chr29:35677346-35677459 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 134-246 |
| Cow position: | chr29:44937800-44937915 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr29:774185-774071 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 134-247 |
| Cow position: | chr29:6337845-6337733 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 134-247 |
| Cow position: | chr29:16164240-16164353 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-247 |
| Cow position: | chr29:41531046-41530933 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 136-246 |
| Cow position: | chr29:38732348-38732237 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 141-244 |
| Cow position: | chr29:31489511-31489405 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 142-247 |
| Cow position: | chr29:35663730-35663836 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 144-245 |
| Cow position: | chr29:24365713-24365814 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.