Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8039L19.5
        

               Conread position:
               1-318
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               236
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               43, 7
               

               Conread position:
               1-403
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 100
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               4-903
               

               Cow position:
               
               

               Alignm length:
               945
               

               Alignm identity:
               647
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 45
               

               Conread position:
               7-369
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 40
               

               Conread position:
               7-402
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 70
               

               Conread position:
               7-698
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               467
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               37, 78
               

               Conread position:
               7-869
               

               Cow position:
               
               

               Alignm length:
               929
               

               Alignm identity:
               613
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 78
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               934
               

               Alignm identity:
               605
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 78
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               936
               

               Alignm identity:
               614
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               938
               

               Alignm identity:
               608
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 78
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               926
               

               Alignm identity:
               599
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 78
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               933
               

               Alignm identity:
               614
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 15
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               936
               

               Alignm identity:
               619
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               7-876
               

               Cow position:
               
               

               Alignm length:
               942
               

               Alignm identity:
               610
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 77
               

               Conread position:
               9-876
               

               Cow position:
               
               

               Alignm length:
               931
               

               Alignm identity:
               613
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 38
               

               Conread position:
               12-514
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               348
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               22, 89
               

               Conread position:
               29-876
               

               Cow position:
               
               

               Alignm length:
               878
               

               Alignm identity:
               605
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 62
               

               Conread position:
               34-876
               

               Cow position:
               
               

               Alignm length:
               905
               

               Alignm identity:
               587
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 63
               

               Conread position:
               35-876
               

               Cow position:
               
               

               Alignm length:
               905
               

               Alignm identity:
               586
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               39-869
               

               Cow position:
               
               

               Alignm length:
               866
               

               Alignm identity:
               592
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               44-828
               

               Cow position:
               
               

               Alignm length:
               831
               

               Alignm identity:
               566
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 37
               

               Conread position:
               44-876
               

               Cow position:
               
               

               Alignm length:
               871
               

               Alignm identity:
               598
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 37
               

               Conread position:
               44-877
               

               Cow position:
               
               

               Alignm length:
               876
               

               Alignm identity:
               587
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 37
               

               Conread position:
               45-849
               

               Cow position:
               
               

               Alignm length:
               857
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               45-876
               

               Cow position:
               
               

               Alignm length:
               890
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               61-735
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 37
               

               Conread position:
               62-403
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               97-876
               

               Cow position:
               
               

               Alignm length:
               808
               

               Alignm identity:
               536
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 40
               

               Conread position:
               144-794
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               145-876
               

               Cow position:
               
               

               Alignm length:
               797
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 625
               

               Conread position:
               148-875
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 234
               

               Conread position:
               149-595
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               199, 65
               

               Conread position:
               152-876
               

               Cow position:
               
               

               Alignm length:
               749
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               158-476
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               9, 136
               

               Conread position:
               158-797
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 60
               

               Conread position:
               158-869
               

               Cow position:
               
               

               Alignm length:
               751
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 59
               

               Conread position:
               158-876
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 60
               

               Conread position:
               158-876
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               540
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 59
               

               Conread position:
               158-876
               

               Cow position:
               
               

               Alignm length:
               765
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 11
               

               Conread position:
               160-854
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               160-876
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 63
               

               Conread position:
               163-876
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               529
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 56
               

               Conread position:
               164-534
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               255
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               148, 46
               

               Conread position:
               164-876
               

               Cow position:
               
               

               Alignm length:
               780
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               164-876
               

               Cow position:
               
               

               Alignm length:
               749
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 53
               

               Conread position:
               164-876
               

               Cow position:
               
               

               Alignm length:
               739
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 53
               

               Conread position:
               164-903
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 53
               

               Conread position:
               166-876
               

               Cow position:
               
               

               Alignm length:
               741
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 170
               

               Conread position:
               167-876
               

               Cow position:
               
               

               Alignm length:
               743
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 194
               

               Conread position:
               167-876
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 218
               

               Conread position:
               176-704
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               176-869
               

               Cow position:
               
               

               Alignm length:
               725
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 41
               

               Conread position:
               176-876
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               176-876
               

               Cow position:
               
               

               Alignm length:
               754
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               176-876
               

               Cow position:
               
               

               Alignm length:
               741
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               176-876
               

               Cow position:
               
               

               Alignm length:
               740
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               188-876
               

               Cow position:
               
               

               Alignm length:
               724
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 121
               

               Conread position:
               191-876
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 26
               

               Conread position:
               197-876
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 20
               

               Conread position:
               225-916
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               462
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               66, 5
               

               Conread position:
               239-876
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               430
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               133, 69
               

               Conread position:
               256-860
               

               Cow position:
               
               

               Alignm length:
               648
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 41
               

               Conread position:
               302-581
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               304-876
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               376
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               151, 16
               

               Conread position:
               318-875
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               377
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               31, 114
               

               Conread position:
               318-876
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 96
               

               Conread position:
               346-876
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               348
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               8, 27
               

               Conread position:
               358-876
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               365-876
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 119
               

               Conread position:
               380-876
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 281
               

               Conread position:
               389-876
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 84
               

               Conread position:
               404-770
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               52, 107
               

               Conread position:
               409-698
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               499-876
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               45, 25
               

               Conread position:
               540-874
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               56, 176
               

               Conread position:
               554-875
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               38, 108
               

               Conread position:
               591-781
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               86, 8
               

               Conread position:
               604-853
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 143
               

               Conread position:
               604-873
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 155
               

               Conread position:
               604-876
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               73, 157
               

               Conread position:
               606-916
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 53
               

               Conread position:
               622-869
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               28, 36
               

               Conread position:
               622-876
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 133
               

               Conread position:
               626-876
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 161
               

               Conread position:
               651-876
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               23, 104
               

               Conread position:
               652-869
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               109, 5
               

               Conread position:
               686-876
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               706-867
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               706-876
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               709-835
               

               Cow position:
               
               

               Alignm length:
               128
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               734-869
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               27, 13
               

               Conread position:
               739-876
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 8
               

               Conread position:
               743-876
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               899-1047
               

               Cow position:
               
               

               Alignm length:
               151
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               114, 47
               

               Conread position:
               899-1061
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               58, 47
               

               Conread position:
               899-1065
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               154, 47
               
Show alignments to all cow chromosomes.