Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-318
Cow position: chr10:39780583-39780264 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 43, 7

Conread position: 1-403
Cow position: chr10:61296562-61296974 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 1-542
Cow position: chr10:54126738-54127275 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 24

Conread position: 4-903
Cow position: chr10:38546956-38546029 (view UCSC Genome Browser custom track)
Alignm length: 945
Alignm identity: 647
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 7-369
Cow position: chr10:19497673-19497309 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 232
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 40

Conread position: 7-402
Cow position: chr10:41566351-41566737 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 248
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 70

Conread position: 7-698
Cow position: chr10:55092355-55093099 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 467
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 37, 78

Conread position: 7-869
Cow position: chr10:41876163-41877084 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chr10:4192973-4192061 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 7-876
Cow position: chr10:14803084-14804008 (view UCSC Genome Browser custom track)
Alignm length: 936
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 40

Conread position: 7-876
Cow position: chr10:21741509-21740580 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chr10:39818102-39817191 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chr10:41156696-41157619 (view UCSC Genome Browser custom track)
Alignm length: 933
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 7-876
Cow position: chr10:47906036-47906950 (view UCSC Genome Browser custom track)
Alignm length: 936
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position: chr10:57560306-57559377 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 77

Conread position: 9-876
Cow position: chr10:21401423-21400499 (view UCSC Genome Browser custom track)
Alignm length: 931
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 38

Conread position: 12-514
Cow position: chr10:42735794-42736290 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 348
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 22, 89

Conread position: 29-876
Cow position: chr10:34685207-34686065 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 62

Conread position: 34-876
Cow position: chr10:51953334-51952446 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 35-876
Cow position: chr10:39179063-39179955 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 10

Conread position: 39-869
Cow position: chr10:7283369-7282522 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 42

Conread position: 44-828
Cow position: chr10:29847305-29846485 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 44-876
Cow position: chr10:32650054-32650905 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 44-877
Cow position: chr10:22100551-22101405 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 45-849
Cow position: chr10:19839454-19840298 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position: chr10:11686374-11685499 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 61-735
Cow position: chr10:31523192-31523856 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 37

Conread position: 62-403
Cow position: chr10:42627795-42628134 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 36

Conread position: 97-876
Cow position: chr10:29633464-29632691 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 40

Conread position: 144-794
Cow position: chr10:57990551-57989876 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 67

Conread position: 145-876
Cow position: chr10:32577674-32578461 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 625

Conread position: 148-875
Cow position: chr10:62216023-62216777 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 234

Conread position: 149-595
Cow position: chr10:14886423-14885980 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 294
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 199, 65

Conread position: 152-876
Cow position: chr10:4499124-4499853 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 158-476
Cow position: chr10:37040512-37040832 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 136

Conread position: 158-797
Cow position: chr10:37060352-37061019 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 60

Conread position: 158-869
Cow position: chr10:19143916-19143173 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr10:21486341-21487086 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 60

Conread position: 158-876
Cow position: chr10:37769249-37769993 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr10:38345949-38345190 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 11

Conread position: 160-854
Cow position: chr10:60489084-60489804 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 21

Conread position: 160-876
Cow position: chr10:49309972-49310675 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 63

Conread position: 163-876
Cow position: chr10:19511040-19511778 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 56

Conread position: 164-534
Cow position: chr10:14951157-14951521 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 148, 46

Conread position: 164-876
Cow position: chr10:281223-280449 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 15

Conread position: 164-876
Cow position: chr10:24299421-24298682 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 53

Conread position: 164-876
Cow position: chr10:46190815-46191530 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 53

Conread position: 164-903
Cow position: chr10:34318821-34318094 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 53

Conread position: 166-876
Cow position: chr10:38539059-38538325 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 167-876
Cow position: chr10:25497796-25498524 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 194

Conread position: 167-876
Cow position: chr10:29695679-29696408 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 218

Conread position: 176-704
Cow position: chr10:10581097-10581667 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 176-869
Cow position: chr10:123768-124475 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 41

Conread position: 176-876
Cow position: chr10:1374981-1375703 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 176-876
Cow position: chr10:8289410-8290155 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 176-876
Cow position: chr10:62409410-62408685 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 176-876
Cow position: chr10:62777797-62778519 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 41

Conread position: 188-876
Cow position: chr10:276068-276761 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 121

Conread position: 191-876
Cow position: chr10:14859445-14860139 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 26

Conread position: 197-876
Cow position: chr10:39041843-39041130 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 20

Conread position: 225-916
Cow position: chr10:32063647-32064359 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 462
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 66, 5

Conread position: 239-876
Cow position: chr10:41352249-41351588 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 430
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 133, 69

Conread position: 256-860
Cow position: chr10:41566623-41567264 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 302-581
Cow position: chr10:19715486-19715188 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 19

Conread position: 304-876
Cow position: chr10:3543994-3543410 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 376
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 151, 16

Conread position: 318-875
Cow position: chr10:58377984-58377418 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 377
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 31, 114

Conread position: 318-876
Cow position: chr10:38846952-38847530 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 346-876
Cow position: chr10:42663854-42664367 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 348
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 27

Conread position: 358-876
Cow position: chr10:54059722-54059184 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 16

Conread position: 365-876
Cow position: chr10:25565609-25565086 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 119

Conread position: 380-876
Cow position: chr10:25359046-25359571 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 281

Conread position: 389-876
Cow position: chr10:10478476-10477969 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 84

Conread position: 404-770
Cow position: chr10:42628344-42628725 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 52, 107

Conread position: 409-698
Cow position: chr10:61297008-61297315 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 16

Conread position: 499-876
Cow position: chr10:19496500-19496114 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 45, 25

Conread position: 540-874
Cow position: chr10:13366036-13365700 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 56, 176

Conread position: 554-875
Cow position: chr10:21518502-21518180 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 108

Conread position: 591-781
Cow position: chr10:65308005-65308201 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 8

Conread position: 604-853
Cow position: chr10:39904819-39905074 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 143

Conread position: 604-873
Cow position: chr10:15862242-15861968 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 155

Conread position: 604-876
Cow position: chr10:39854122-39853842 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 73, 157

Conread position: 606-916
Cow position: chr10:66176006-66175698 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 53

Conread position: 622-869
Cow position: chr10:24313918-24313670 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 36

Conread position: 622-876
Cow position: chr10:16925445-16925708 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 133

Conread position: 626-876
Cow position: chr10:46694461-46694204 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 161

Conread position: 651-876
Cow position: chr10:2123323-2123090 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 23, 104

Conread position: 652-869
Cow position: chr10:40152504-40152291 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 109, 5

Conread position: 686-876
Cow position: chr10:39445156-39444968 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 706-867
Cow position: chr10:54979878-54979724 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 14

Conread position: 706-876
Cow position: chr10:55093244-55093413 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 42

Conread position: 709-835
Cow position: chr10:25454595-25454721 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 38

Conread position: 734-869
Cow position: chr10:10581822-10581962 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 13

Conread position: 739-876
Cow position: chr10:19758386-19758523 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 8

Conread position: 743-876
Cow position: chr10:28931989-28931853 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 899-1047
Cow position: chr10:54979122-54978977 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 114, 47

Conread position: 899-1061
Cow position: chr10:8339244-8339407 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 137
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 58, 47

Conread position: 899-1065
Cow position: chr10:42628973-42629134 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 154, 47

Show alignments to all cow chromosomes.