Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-425 |
| Cow position: | chr12:22120917-22121341 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 7-876 |
| Cow position: | chr12:32652705-32653641 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 10-367 |
| Cow position: | chr12:32182750-32183097 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 10-403 |
| Cow position: | chr12:21058764-21058375 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 10-876 |
| Cow position: | chr12:37557730-37558652 (view UCSC Genome Browser custom track) |
| Alignm length: | 929 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 11-876 |
| Cow position: | chr12:21206870-21207791 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 13-869 |
| Cow position: | chr12:20998922-20998034 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 14-302 |
| Cow position: | chr12:15954473-15954192 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 33-314 |
| Cow position: | chr12:8310276-8310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 44-868 |
| Cow position: | chr12:27933705-27932855 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 45-876 |
| Cow position: | chr12:43032167-43031287 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 48-704 |
| Cow position: | chr12:21197068-21197746 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 71-876 |
| Cow position: | chr12:2281801-2282643 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 72-514 |
| Cow position: | chr12:26947981-26947558 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 145-869 |
| Cow position: | chr12:22206406-22205657 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 149 |
| Conread position: | 145-876 |
| Cow position: | chr12:22331956-22332722 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 156-876 |
| Cow position: | chr12:1136951-1137683 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 461 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 158-428 |
| Cow position: | chr12:28766752-28766483 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 158-876 |
| Cow position: | chr12:252709-251959 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr12:6407294-6406551 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 159-876 |
| Cow position: | chr12:42860464-42859730 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 164-400 |
| Cow position: | chr12:48404127-48404363 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 166 |
| Conread position: | 164-876 |
| Cow position: | chr12:3360234-3361001 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 470 |
| Conread position: | 166-867 |
| Cow position: | chr12:11097598-11098330 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 167-461 |
| Cow position: | chr12:45261010-45261307 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 167-876 |
| Cow position: | chr12:21901337-21902036 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 143 |
| Conread position: | 175-840 |
| Cow position: | chr12:21499486-21500177 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 176-876 |
| Cow position: | chr12:1401860-1402588 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 176-876 |
| Cow position: | chr12:8678752-8678025 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 188-876 |
| Cow position: | chr12:2193-2896 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 194-361 |
| Cow position: | chr12:21940891-21941058 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 194-876 |
| Cow position: | chr12:25101679-25100964 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 281-876 |
| Cow position: | chr12:21426165-21426791 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 284-856 |
| Cow position: | chr12:15951782-15951183 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 308 |
| Conread position: | 295-876 |
| Cow position: | chr12:26141286-26141911 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 205 |
| Conread position: | 302-876 |
| Cow position: | chr12:21255167-21254559 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 138 |
| Conread position: | 372-869 |
| Cow position: | chr12:14693226-14693717 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 372-876 |
| Cow position: | chr12:8310745-8311278 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 409 |
| Conread position: | 373-876 |
| Cow position: | chr12:21941342-21941862 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 298 |
| Conread position: | 397-768 |
| Cow position: | chr12:48404637-48405033 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 54, 376 |
| Conread position: | 398-876 |
| Cow position: | chr12:14663022-14662536 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 325 |
| Conread position: | 452-869 |
| Cow position: | chr12:28766370-28765929 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 217 |
| Conread position: | 490-876 |
| Cow position: | chr12:8982722-8982326 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 542-858 |
| Cow position: | chr12:45261358-45261694 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 222 |
| Conread position: | 604-875 |
| Cow position: | chr12:26947163-26946896 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 118 |
| Conread position: | 735-876 |
| Cow position: | chr12:18501001-18501140 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 899-1061 |
| Cow position: | chr12:15950995-15950837 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 154, 48 |
Show alignments to all cow chromosomes.