Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 7-876 |
| Cow position: | chr13:2297846-2296922 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr13:2389852-2388942 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 7-876 |
| Cow position: | chr13:21841252-21840318 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 7-876 |
| Cow position: | chr13:30245782-30244857 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr13:31735127-31734205 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-876 |
| Cow position: | chr13:50108435-50109338 (view UCSC Genome Browser custom track) |
| Alignm length: | 914 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 10-876 |
| Cow position: | chr13:20543368-20542497 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 645 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 29-876 |
| Cow position: | chr13:33825729-33824855 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 29-876 |
| Cow position: | chr13:34143629-34142783 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 29-876 |
| Cow position: | chr13:34692189-34693039 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 29-903 |
| Cow position: | chr13:62328564-62327684 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 628 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 34-876 |
| Cow position: | chr13:33928507-33927694 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 44-869 |
| Cow position: | chr13:31613325-31612466 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 45-876 |
| Cow position: | chr13:32987066-32986180 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 45-876 |
| Cow position: | chr13:49972698-49973560 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 54-607 |
| Cow position: | chr13:15542493-15543055 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 374 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 72-681 |
| Cow position: | chr13:13046752-13046149 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 18 |
| Conread position: | 97-876 |
| Cow position: | chr13:34187613-34186809 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 105-833 |
| Cow position: | chr13:34867819-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 145-874 |
| Cow position: | chr13:30657837-30657100 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 149-876 |
| Cow position: | chr13:34768089-34767410 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 481 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 152-869 |
| Cow position: | chr13:15081050-15080346 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 451 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 156-869 |
| Cow position: | chr13:32738681-32737953 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 158-814 |
| Cow position: | chr13:32544081-32544754 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 158-869 |
| Cow position: | chr13:34043235-34042500 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr13:1594028-1593279 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr13:4940213-4940964 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 158-876 |
| Cow position: | chr13:6669015-6668247 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 139 |
| Conread position: | 158-876 |
| Cow position: | chr13:9043659-9044377 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr13:15925256-15924508 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr13:30302199-30302940 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 158-876 |
| Cow position: | chr13:35756363-35757117 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 159-876 |
| Cow position: | chr13:33337191-33336466 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 160-366 |
| Cow position: | chr13:34935987-34936195 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 59, 178 |
| Conread position: | 160-876 |
| Cow position: | chr13:48356459-48357181 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 21 |
| Conread position: | 164-524 |
| Cow position: | chr13:47859471-47859819 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 164-845 |
| Cow position: | chr13:2231827-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 164-876 |
| Cow position: | chr13:4872178-4872953 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 496 |
| Conread position: | 164-876 |
| Cow position: | chr13:15521389-15520639 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 164-876 |
| Cow position: | chr13:34326558-34325798 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 241 |
| Conread position: | 166-372 |
| Cow position: | chr13:58716140-58716336 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 166-875 |
| Cow position: | chr13:3276301-3277029 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 166-876 |
| Cow position: | chr13:2909296-2908574 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 210 |
| Conread position: | 167-876 |
| Cow position: | chr13:31831756-31832476 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 221 |
| Conread position: | 176-876 |
| Cow position: | chr13:13323922-13324625 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 172 |
| Conread position: | 177-745 |
| Cow position: | chr13:46733181-46732609 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 272, 37 |
| Conread position: | 196-876 |
| Cow position: | chr13:30063332-30064002 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 433 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 197-839 |
| Cow position: | chr13:3655141-3654470 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 120 |
| Conread position: | 215-876 |
| Cow position: | chr13:30140173-30140869 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 442 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 218-897 |
| Cow position: | chr13:54283780-54284469 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 369 |
| Conread position: | 220-876 |
| Cow position: | chr13:31560382-31561064 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 418 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 253-876 |
| Cow position: | chr13:17307702-17308351 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 365-876 |
| Cow position: | chr13:34912027-34911502 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 365-876 |
| Cow position: | chr13:34936473-34937023 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 558-856 |
| Cow position: | chr13:10115081-10114793 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 561-876 |
| Cow position: | chr13:56730737-56730410 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 604-876 |
| Cow position: | chr13:21130925-21131196 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 604-876 |
| Cow position: | chr13:23003919-23003640 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 151 |
| Conread position: | 630-850 |
| Cow position: | chr13:15451862-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 651-862 |
| Cow position: | chr13:3567428-3567645 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 709-876 |
| Cow position: | chr13:47230277-47230111 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 899-1065 |
| Cow position: | chr13:20542322-20542162 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 901-1051 |
| Cow position: | chr13:15451507-15451361 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.