Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-582
Cow position: chr14:50133765-50134349 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 18

Conread position: 1-822
Cow position: chr14:45159692-45160546 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 48

Conread position: 7-579
Cow position: chr14:2282817-2283424 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 390
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 40

Conread position: 7-872
Cow position: chr14:46083485-46084371 (view UCSC Genome Browser custom track)
Alignm length: 900
Alignm identity: 635
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 93

Conread position: 7-873
Cow position: chr14:40338547-40339432 (view UCSC Genome Browser custom track)
Alignm length: 916
Alignm identity: 640
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 11

Conread position: 7-876
Cow position: chr14:30586116-30585199 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position: chr14:30597566-30596632 (view UCSC Genome Browser custom track)
Alignm length: 948
Alignm identity: 625
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 46

Conread position: 10-403
Cow position: chr14:45304776-45304379 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 8

Conread position: 10-588
Cow position: chr14:46463652-46464236 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 91

Conread position: 10-876
Cow position: chr14:41754735-41755596 (view UCSC Genome Browser custom track)
Alignm length: 894
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 96

Conread position: 11-876
Cow position: chr14:45204939-45205830 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 563
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 27, 75

Conread position: 25-876
Cow position: chr14:44684904-44685795 (view UCSC Genome Browser custom track)
Alignm length: 910
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 80

Conread position: 29-612
Cow position: chr14:41085900-41085341 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 392
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 67

Conread position: 29-876
Cow position: chr14:13661089-13660236 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 42

Conread position: 32-876
Cow position: chr14:44129839-44130667 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 32

Conread position: 32-876
Cow position: chr14:45713069-45712234 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 32-876
Cow position: chr14:47623465-47624312 (view UCSC Genome Browser custom track)
Alignm length: 889
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 40-876
Cow position: chr14:17492597-17491704 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 44-876
Cow position: chr14:17684296-17685148 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 45-322
Cow position: chr14:29049516-29049240 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 53

Conread position: 45-389
Cow position: chr14:9044342-9044687 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 39

Conread position: 67-876
Cow position: chr14:35388214-35387397 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 69-873
Cow position: chr14:45766947-45767751 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 140-875
Cow position: chr14:47588866-47589621 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 475
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 10

Conread position: 145-876
Cow position: chr14:11467598-11468338 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 71

Conread position: 149-874
Cow position: chr14:22018393-22019143 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 65

Conread position: 154-876
Cow position: chr14:7831514-7830788 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 62

Conread position: 156-861
Cow position: chr14:31607907-31607192 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 63

Conread position: 158-594
Cow position: chr14:44551050-44551506 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 158-672
Cow position: chr14:44780909-44780376 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 339
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 60, 111

Conread position: 158-851
Cow position: chr14:44783249-44782532 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 458
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 60, 111

Conread position: 158-869
Cow position: chr14:5528069-5528807 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 136

Conread position: 158-876
Cow position: chr14:7471379-7472126 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr14:13302032-13302782 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 158-876
Cow position: chr14:16274294-16273543 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr14:22032677-22031935 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 61

Conread position: 158-876
Cow position: chr14:28994855-28994102 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr14:48255309-48254563 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr14:50109592-50110318 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 174

Conread position: 159-876
Cow position: chr14:44376431-44377181 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 72

Conread position: 161-874
Cow position: chr14:14310041-14309327 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 53

Conread position: 163-869
Cow position: chr14:20781467-20782201 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 164-402
Cow position: chr14:16418562-16418311 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 134, 53

Conread position: 164-786
Cow position: chr14:44579961-44580584 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 419
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 44

Conread position: 164-805
Cow position: chr14:45833173-45833845 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 122

Conread position: 164-876
Cow position: chr14:13272263-13273004 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 166-876
Cow position: chr14:17002037-17001302 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position: chr14:19329255-19328516 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 127

Conread position: 167-876
Cow position: chr14:23691205-23690477 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 204

Conread position: 167-876
Cow position: chr14:44856398-44855674 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 204

Conread position: 175-876
Cow position: chr14:11155133-11154413 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 143

Conread position: 175-876
Cow position: chr14:41406862-41407574 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 472
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 156, 226

Conread position: 176-366
Cow position: chr14:42403917-42404109 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 176-668
Cow position: chr14:14422980-14422489 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 331
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 50, 8

Conread position: 176-876
Cow position: chr14:37222923-37223654 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 117

Conread position: 184-867
Cow position: chr14:44225432-44226142 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 414

Conread position: 210-876
Cow position: chr14:35928232-35928932 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 67

Conread position: 216-876
Cow position: chr14:36967329-36968007 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 166

Conread position: 242-874
Cow position: chr14:38533217-38532542 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 78

Conread position: 281-876
Cow position: chr14:749692-750322 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 213

Conread position: 295-876
Cow position: chr14:45672915-45672292 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 494

Conread position: 299-876
Cow position: chr14:45850376-45850974 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 302-595
Cow position: chr14:45916552-45916851 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 147, 80

Conread position: 332-859
Cow position: chr14:40170509-40169951 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 215

Conread position: 358-876
Cow position: chr14:23256561-23257111 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 16

Conread position: 366-869
Cow position: chr14:45079748-45080266 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 73

Conread position: 366-876
Cow position: chr14:29048683-29048151 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 372-876
Cow position: chr14:27993058-27992556 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 329
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 28, 39

Conread position: 374-876
Cow position: chr14:9044784-9045318 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 32

Conread position: 385-869
Cow position: chr14:23529762-23529278 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 307
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 36

Conread position: 410-876
Cow position: chr14:16920427-16919938 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 261

Conread position: 443-876
Cow position: chr14:42151621-42152075 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 22

Conread position: 447-876
Cow position: chr14:44421854-44422306 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 131

Conread position: 496-876
Cow position: chr14:33394427-33394024 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 274

Conread position: 527-819
Cow position: chr14:13622229-13621915 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 12, 130

Conread position: 530-874
Cow position: chr14:45303976-45303614 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 216

Conread position: 576-875
Cow position: chr14:45029667-45029372 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 9

Conread position: 577-876
Cow position: chr14:21743049-21743355 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 55

Conread position: 585-876
Cow position: chr14:50134526-50134822 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 71

Conread position: 590-876
Cow position: chr14:15277117-15276828 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 11

Conread position: 591-876
Cow position: chr14:23901339-23901048 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 8

Conread position: 604-868
Cow position: chr14:31887151-31887421 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 604-869
Cow position: chr14:46464543-46464818 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 151

Conread position: 604-876
Cow position: chr14:2283812-2284091 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 73, 151

Conread position: 622-876
Cow position: chr14:41085292-41085030 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 632-876
Cow position: chr14:13864581-13864331 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 17

Conread position: 672-874
Cow position: chr14:45916960-45917166 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 8

Conread position: 688-876
Cow position: chr14:13480169-13479982 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 63

Conread position: 703-876
Cow position: chr14:5511401-5511574 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 20

Conread position: 706-874
Cow position: chr14:22242465-22242631 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 49

Conread position: 709-874
Cow position: chr14:37414303-37414136 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 709-876
Cow position: chr14:19619811-19619972 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 20

Conread position: 732-876
Cow position: chr14:44287642-44287498 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 15

Conread position: 736-876
Cow position: chr14:44551497-44551634 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 886-1065
Cow position: chr14:35387229-35387058 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 170, 13

Conread position: 899-1061
Cow position: chr14:40339613-40339767 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 154, 42

Conread position: 908-1065
Cow position: chr14:45303424-45303270 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 144, 40

Show alignments to all cow chromosomes.