Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 7-369 |
| Cow position: | chr17:43987575-43987935 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-370 |
| Cow position: | chr17:6119202-6119566 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 7-589 |
| Cow position: | chr17:180685-181284 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 352 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-776 |
| Cow position: | chr17:11782423-11783248 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 483 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr17:14217974-14217040 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 8-876 |
| Cow position: | chr17:4059198-4060086 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 10-796 |
| Cow position: | chr17:15370181-15370976 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 10-872 |
| Cow position: | chr17:2261176-2262086 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 10-876 |
| Cow position: | chr17:15144305-15143383 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 32-876 |
| Cow position: | chr17:16889277-16890103 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 32-876 |
| Cow position: | chr17:23857899-23857050 (view UCSC Genome Browser custom track) |
| Alignm length: | 892 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 42-876 |
| Cow position: | chr17:15157859-15156979 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 44-869 |
| Cow position: | chr17:16860450-16859579 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 56-876 |
| Cow position: | chr17:8208211-8209090 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 145-876 |
| Cow position: | chr17:1383627-1382830 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 518 |
| Conread position: | 145-876 |
| Cow position: | chr17:24780238-24781032 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 150-372 |
| Cow position: | chr17:15417076-15417295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 154-612 |
| Cow position: | chr17:32024947-32024494 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 154-868 |
| Cow position: | chr17:19270117-19269390 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 158-317 |
| Cow position: | chr17:248916-249076 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 158-857 |
| Cow position: | chr17:229087-228338 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 158-869 |
| Cow position: | chr17:3643588-3642859 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr17:13857551-13856785 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 160-869 |
| Cow position: | chr17:4080881-4081617 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 160-916 |
| Cow position: | chr17:31200834-31200062 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 162-876 |
| Cow position: | chr17:20666515-20665742 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 644 |
| Conread position: | 164-770 |
| Cow position: | chr17:2146462-2147079 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 390 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 164-867 |
| Cow position: | chr17:20400930-20401650 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 52 |
| Conread position: | 164-876 |
| Cow position: | chr17:153214-152498 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 50 |
| Conread position: | 164-876 |
| Cow position: | chr17:6089912-6089177 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 211 |
| Conread position: | 164-876 |
| Cow position: | chr17:14326231-14325518 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 20 |
| Conread position: | 164-876 |
| Cow position: | chr17:42263802-42264487 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 166-869 |
| Cow position: | chr17:15322079-15322786 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 166-876 |
| Cow position: | chr17:18104438-18103696 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 167-380 |
| Cow position: | chr17:455612-455397 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 167-588 |
| Cow position: | chr17:2286633-2287053 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 204 |
| Conread position: | 167-833 |
| Cow position: | chr17:1284507-1283847 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 212 |
| Conread position: | 167-866 |
| Cow position: | chr17:22430211-22429509 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 143 |
| Conread position: | 167-876 |
| Cow position: | chr17:27345064-27345783 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 167-876 |
| Cow position: | chr17:35591493-35592197 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 50 |
| Conread position: | 167-876 |
| Cow position: | chr17:44853654-44852948 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 175-876 |
| Cow position: | chr17:13928935-13929652 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 176-401 |
| Cow position: | chr17:3694424-3694192 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 176-592 |
| Cow position: | chr17:6258960-6259382 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 177-514 |
| Cow position: | chr17:1945446-1945772 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 179-861 |
| Cow position: | chr17:2587577-2588280 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 189-869 |
| Cow position: | chr17:11088465-11087747 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 204-876 |
| Cow position: | chr17:2249302-2248600 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 83 |
| Conread position: | 253-876 |
| Cow position: | chr17:9654125-9653472 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 290-803 |
| Cow position: | chr17:249285-249829 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 235 |
| Conread position: | 295-876 |
| Cow position: | chr17:22160275-22160900 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 496 |
| Conread position: | 295-876 |
| Cow position: | chr17:24633316-24633938 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 199 |
| Conread position: | 302-850 |
| Cow position: | chr17:14893533-14894119 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 349-876 |
| Cow position: | chr17:25737088-25737647 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 370-903 |
| Cow position: | chr17:39933134-39933668 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 228 |
| Conread position: | 372-596 |
| Cow position: | chr17:20088300-20088069 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 373-876 |
| Cow position: | chr17:15435244-15435775 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 111 |
| Conread position: | 374-876 |
| Cow position: | chr17:4294847-4295334 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 31 |
| Conread position: | 385-804 |
| Cow position: | chr17:28109557-28109999 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 443-876 |
| Cow position: | chr17:2173405-2173862 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 452-902 |
| Cow position: | chr17:1879624-1880101 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 323 |
| Conread position: | 458-876 |
| Cow position: | chr17:15849939-15850380 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 487-872 |
| Cow position: | chr17:1658986-1658595 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 491-862 |
| Cow position: | chr17:43988114-43988507 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 512-876 |
| Cow position: | chr17:18185927-18185549 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 208 |
| Conread position: | 527-876 |
| Cow position: | chr17:23324829-23324470 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 540-876 |
| Cow position: | chr17:1946604-1946959 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 228 |
| Conread position: | 540-876 |
| Cow position: | chr17:20183597-20183247 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 223 |
| Conread position: | 604-856 |
| Cow position: | chr17:20088026-20087768 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 604-874 |
| Cow position: | chr17:2287093-2287368 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 148 |
| Conread position: | 604-876 |
| Cow position: | chr17:6259549-6259829 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 604-876 |
| Cow position: | chr17:22131938-22132214 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 67 |
| Conread position: | 630-876 |
| Cow position: | chr17:18027027-18026773 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 131 |
| Conread position: | 641-876 |
| Cow position: | chr17:2555864-2556107 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 686-876 |
| Cow position: | chr17:2579427-2579609 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 743-876 |
| Cow position: | chr17:31199792-31199659 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 765-876 |
| Cow position: | chr17:40804689-40804800 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 886-1043 |
| Cow position: | chr17:15371200-15371352 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 900-1065 |
| Cow position: | chr17:14325351-14325186 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 18, 47 |
Show alignments to all cow chromosomes.