Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-536 |
| Cow position: | chr18:29236052-29236608 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 7-317 |
| Cow position: | chr18:54001759-54002070 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 7-840 |
| Cow position: | chr18:44621018-44621915 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 7-876 |
| Cow position: | chr18:16077967-16078909 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-876 |
| Cow position: | chr18:19351641-19352577 (view UCSC Genome Browser custom track) |
| Alignm length: | 951 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 7-876 |
| Cow position: | chr18:55089665-55088733 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 28-403 |
| Cow position: | chr18:40477463-40477832 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 28-869 |
| Cow position: | chr18:23796969-23797832 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 29-361 |
| Cow position: | chr18:2020571-2020244 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 32-876 |
| Cow position: | chr18:33268208-33269017 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 36-876 |
| Cow position: | chr18:1520482-1521320 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 44-403 |
| Cow position: | chr18:32651285-32651638 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 45-876 |
| Cow position: | chr18:11275781-11274914 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 54-868 |
| Cow position: | chr18:37504411-37505247 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 54-876 |
| Cow position: | chr18:41841484-41840633 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 56-843 |
| Cow position: | chr18:16660666-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 71-367 |
| Cow position: | chr18:54172711-54172422 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 75-876 |
| Cow position: | chr18:51257371-51258175 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 154-876 |
| Cow position: | chr18:33358309-33359058 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 158-869 |
| Cow position: | chr18:16177171-16176429 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-874 |
| Cow position: | chr18:54024924-54024170 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 158-876 |
| Cow position: | chr18:27838854-27838124 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 158-876 |
| Cow position: | chr18:28974455-28973711 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr18:36507774-36508524 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 159-876 |
| Cow position: | chr18:33335309-33336059 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 281 |
| Conread position: | 164-453 |
| Cow position: | chr18:43200241-43200531 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 164-704 |
| Cow position: | chr18:25349489-25350053 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 164-743 |
| Cow position: | chr18:45958149-45958742 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 54 |
| Conread position: | 166-380 |
| Cow position: | chr18:17993292-17993079 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 166-380 |
| Cow position: | chr18:30198123-30198338 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 167-875 |
| Cow position: | chr18:43147461-43146735 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 167-876 |
| Cow position: | chr18:32293242-32293958 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 205 |
| Conread position: | 167-876 |
| Cow position: | chr18:39748050-39748770 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 209 |
| Conread position: | 169-590 |
| Cow position: | chr18:14129747-14130180 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 176-876 |
| Cow position: | chr18:35334957-35335671 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 188-876 |
| Cow position: | chr18:23944878-23944183 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 190-876 |
| Cow position: | chr18:48221374-48222071 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 223-877 |
| Cow position: | chr18:51480349-51481032 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 239-876 |
| Cow position: | chr18:51310141-51310777 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 77 |
| Conread position: | 245-588 |
| Cow position: | chr18:42245014-42244676 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 131, 88 |
| Conread position: | 295-704 |
| Cow position: | chr18:37586096-37585650 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 376 |
| Conread position: | 295-876 |
| Cow position: | chr18:33954003-33953377 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 208 |
| Conread position: | 302-876 |
| Cow position: | chr18:47741594-47742210 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 488 |
| Conread position: | 307-876 |
| Cow position: | chr18:29945809-29946373 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 349-876 |
| Cow position: | chr18:54172211-54171668 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 366-876 |
| Cow position: | chr18:14415629-14416168 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 410 |
| Conread position: | 376-876 |
| Cow position: | chr18:2020022-2019494 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 222 |
| Conread position: | 376-876 |
| Cow position: | chr18:47719909-47719392 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 224 |
| Conread position: | 386-876 |
| Cow position: | chr18:22602157-22602679 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 397-848 |
| Cow position: | chr18:17992880-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 185 |
| Conread position: | 398-876 |
| Cow position: | chr18:40478067-40478575 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 365 |
| Conread position: | 409-725 |
| Cow position: | chr18:32651689-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 481-876 |
| Cow position: | chr18:43200838-43201246 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 32 |
| Conread position: | 488-874 |
| Cow position: | chr18:16533767-16534168 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 496-876 |
| Cow position: | chr18:6869467-6869067 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 524-876 |
| Cow position: | chr18:53785658-53786031 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 539-840 |
| Cow position: | chr18:16877321-16877633 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 542-869 |
| Cow position: | chr18:29070100-29070430 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 542-876 |
| Cow position: | chr18:29236656-29237001 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 542-876 |
| Cow position: | chr18:51689465-51689816 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 224 |
| Conread position: | 591-876 |
| Cow position: | chr18:51341587-51341878 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 604-860 |
| Cow position: | chr18:35288444-35288714 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 604-869 |
| Cow position: | chr18:54044789-54044523 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 149 |
| Conread position: | 604-876 |
| Cow position: | chr18:2887109-2886829 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 156 |
| Conread position: | 625-876 |
| Cow position: | chr18:14130323-14130576 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 651-876 |
| Cow position: | chr18:52650890-52651112 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 672-876 |
| Cow position: | chr18:114376-114583 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 702-868 |
| Cow position: | chr18:19539562-19539396 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 706-875 |
| Cow position: | chr18:24040711-24040542 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 706-876 |
| Cow position: | chr18:25350686-25350857 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 706-876 |
| Cow position: | chr18:51463053-51462886 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 707-876 |
| Cow position: | chr18:8312283-8312453 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 715-869 |
| Cow position: | chr18:32652251-32652404 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 751-876 |
| Cow position: | chr18:16843270-16843146 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 761-868 |
| Cow position: | chr18:18089396-18089289 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 881-1048 |
| Cow position: | chr18:54171507-54171346 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 886-1061 |
| Cow position: | chr18:56462547-56462376 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 163, 22 |
| Conread position: | 886-1065 |
| Cow position: | chr18:29237170-29237346 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 22 |
Show alignments to all cow chromosomes.