Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 3-876 |
| Cow position: | chr19:33709-34612 (view UCSC Genome Browser custom track) |
| Alignm length: | 920 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 7-704 |
| Cow position: | chr19:52152980-52152243 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-707 |
| Cow position: | chr19:685112-685864 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 496 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 37, 134 |
| Conread position: | 7-875 |
| Cow position: | chr19:32212797-32211878 (view UCSC Genome Browser custom track) |
| Alignm length: | 936 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 10-519 |
| Cow position: | chr19:37170-37684 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 10-876 |
| Cow position: | chr19:771881-772795 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 13-876 |
| Cow position: | chr19:7341346-7342264 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 24-869 |
| Cow position: | chr19:40853113-40852249 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 32-647 |
| Cow position: | chr19:32238508-32237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 422 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 44-403 |
| Cow position: | chr19:7487400-7487752 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 45-875 |
| Cow position: | chr19:43143022-43143911 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 69-526 |
| Cow position: | chr19:27053474-27053012 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 70-561 |
| Cow position: | chr19:801365-801852 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 72-389 |
| Cow position: | chr19:24748311-24748636 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 78-603 |
| Cow position: | chr19:351184-350664 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 84-876 |
| Cow position: | chr19:171591-172407 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 109-388 |
| Cow position: | chr19:353241-352971 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 141-876 |
| Cow position: | chr19:28582210-28581463 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 150 |
| Conread position: | 144-869 |
| Cow position: | chr19:39389956-39390697 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 145-748 |
| Cow position: | chr19:4252918-4252291 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 148-876 |
| Cow position: | chr19:1031559-1032271 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 245 |
| Conread position: | 150-876 |
| Cow position: | chr19:416104-416857 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 185 |
| Conread position: | 150-876 |
| Cow position: | chr19:35978710-35979461 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 473 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 154-696 |
| Cow position: | chr19:35376010-35376569 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 158-578 |
| Cow position: | chr19:33872690-33873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 58, 135 |
| Conread position: | 158-876 |
| Cow position: | chr19:260881-261640 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 158-876 |
| Cow position: | chr19:10672860-10672110 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 158-876 |
| Cow position: | chr19:40888187-40887456 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 158-876 |
| Cow position: | chr19:55078196-55078942 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 171 |
| Conread position: | 159-876 |
| Cow position: | chr19:203414-204157 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 160-607 |
| Cow position: | chr19:6552859-6553301 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 196, 56 |
| Conread position: | 160-874 |
| Cow position: | chr19:32223970-32223253 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 304 |
| Conread position: | 161-876 |
| Cow position: | chr19:76793-76073 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 343 |
| Conread position: | 164-425 |
| Cow position: | chr19:894108-893847 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 164-607 |
| Cow position: | chr19:36476814-36477263 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 164-673 |
| Cow position: | chr19:42649609-42649091 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 164-876 |
| Cow position: | chr19:20125110-20125799 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 53 |
| Conread position: | 165-876 |
| Cow position: | chr19:39546126-39546823 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 52 |
| Conread position: | 166-825 |
| Cow position: | chr19:440178-439498 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 166-862 |
| Cow position: | chr19:33941071-33941792 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 177-479 |
| Cow position: | chr19:562241-561932 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 177-838 |
| Cow position: | chr19:29209039-29209717 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 136 |
| Conread position: | 177-876 |
| Cow position: | chr19:4384943-4385676 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 282-519 |
| Cow position: | chr19:378313-378074 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 173, 116 |
| Conread position: | 283-869 |
| Cow position: | chr19:30754750-30755369 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 51 |
| Conread position: | 286-805 |
| Cow position: | chr19:4533153-4532629 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 295-805 |
| Cow position: | chr19:32193155-32193703 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 173 |
| Conread position: | 301-876 |
| Cow position: | chr19:894015-893419 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 302-862 |
| Cow position: | chr19:28592870-28593463 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 302-876 |
| Cow position: | chr19:37487-38091 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 193 |
| Conread position: | 364-876 |
| Cow position: | chr19:30371927-30372470 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 226 |
| Conread position: | 367-876 |
| Cow position: | chr19:171087-170551 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 372-876 |
| Cow position: | chr19:359832-359314 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 112 |
| Conread position: | 374-876 |
| Cow position: | chr19:32244342-32244880 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 409 |
| Conread position: | 392-831 |
| Cow position: | chr19:31341404-31341859 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 395-876 |
| Cow position: | chr19:32665216-32665726 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 283 |
| Conread position: | 397-876 |
| Cow position: | chr19:39688235-39688725 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 409-876 |
| Cow position: | chr19:7488010-7488509 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 370 |
| Conread position: | 512-876 |
| Cow position: | chr19:15953670-15954049 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 540-785 |
| Cow position: | chr19:28376371-28376627 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 542-826 |
| Cow position: | chr19:27052921-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 604-876 |
| Cow position: | chr19:543709-543430 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 604-876 |
| Cow position: | chr19:6553529-6553798 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 123, 94 |
| Conread position: | 604-876 |
| Cow position: | chr19:33873343-33873622 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 606-876 |
| Cow position: | chr19:350365-350095 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 181 |
| Conread position: | 632-875 |
| Cow position: | chr19:32237736-32237487 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 706-876 |
| Cow position: | chr19:20104739-20104909 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 706-876 |
| Cow position: | chr19:52151805-52151634 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 711-875 |
| Cow position: | chr19:687096-687260 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 735-876 |
| Cow position: | chr19:2274326-2274182 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 740-874 |
| Cow position: | chr19:352933-352799 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 745-876 |
| Cow position: | chr19:35376850-35376983 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 886-1065 |
| Cow position: | chr19:44532477-44532655 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 890-1061 |
| Cow position: | chr19:43051-43218 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 899-1065 |
| Cow position: | chr19:136985-136819 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 157, 49 |
| Conread position: | 899-1066 |
| Cow position: | chr19:27052476-27052319 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 953-1065 |
| Cow position: | chr19:3138021-3138135 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.