Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-876 |
| Cow position: | chr20:18316332-18315441 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 630 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 7-370 |
| Cow position: | chr20:10847037-10846686 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 7-876 |
| Cow position: | chr20:19437191-19438102 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 10-860 |
| Cow position: | chr20:21392832-21393701 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 11-542 |
| Cow position: | chr20:13681821-13681295 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 11-612 |
| Cow position: | chr20:11277029-11276425 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 12-874 |
| Cow position: | chr20:15064008-15064917 (view UCSC Genome Browser custom track) |
| Alignm length: | 921 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 29-876 |
| Cow position: | chr20:5483503-5484342 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 32-518 |
| Cow position: | chr20:19006321-19005863 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 44-869 |
| Cow position: | chr20:15291352-15292156 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 44-876 |
| Cow position: | chr20:13762205-13763056 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 44-876 |
| Cow position: | chr20:23798170-23799035 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 67-314 |
| Cow position: | chr20:3032301-3032548 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 72-820 |
| Cow position: | chr20:4800292-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 144-821 |
| Cow position: | chr20:10103161-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 150-862 |
| Cow position: | chr20:28160161-28160914 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 150-875 |
| Cow position: | chr20:30683734-30684487 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 151-577 |
| Cow position: | chr20:29947580-29948020 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 152-828 |
| Cow position: | chr20:29572792-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 445 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 154-596 |
| Cow position: | chr20:8994405-8993964 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 158-595 |
| Cow position: | chr20:8005110-8004662 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 158-876 |
| Cow position: | chr20:5534351-5535090 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr20:7117067-7116316 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr20:12439342-12438608 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 158-876 |
| Cow position: | chr20:21913741-21914480 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 158-876 |
| Cow position: | chr20:23470257-23469506 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 178 |
| Conread position: | 158-876 |
| Cow position: | chr20:25851582-25850838 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr20:27868601-27869350 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 160-831 |
| Cow position: | chr20:22718254-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 440 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 140, 44 |
| Conread position: | 164-588 |
| Cow position: | chr20:822133-822596 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 354 |
| Conread position: | 165-831 |
| Cow position: | chr20:28593147-28593850 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 167 |
| Conread position: | 166-518 |
| Cow position: | chr20:35118663-35119013 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 167-874 |
| Cow position: | chr20:8314005-8313289 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 194 |
| Conread position: | 167-876 |
| Cow position: | chr20:3252718-3251981 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 209 |
| Conread position: | 176-876 |
| Cow position: | chr20:22205958-22206688 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 452 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 159 |
| Conread position: | 210-876 |
| Cow position: | chr20:13665698-13665058 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 440 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 299-876 |
| Cow position: | chr20:24614083-24614687 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 317-857 |
| Cow position: | chr20:20905629-20905069 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 347-876 |
| Cow position: | chr20:31379275-31378732 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 365-876 |
| Cow position: | chr20:15098258-15097725 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 404 |
| Conread position: | 376-788 |
| Cow position: | chr20:10846454-10846012 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 381-876 |
| Cow position: | chr20:5561089-5560562 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 107 |
| Conread position: | 394-876 |
| Cow position: | chr20:3270362-3270857 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 409-874 |
| Cow position: | chr20:9954301-9953834 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 409-876 |
| Cow position: | chr20:28565946-28565443 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 380 |
| Conread position: | 512-876 |
| Cow position: | chr20:11679345-11678957 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 259 |
| Conread position: | 542-876 |
| Cow position: | chr20:35119373-35119723 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 591-876 |
| Cow position: | chr20:822629-822920 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 593-876 |
| Cow position: | chr20:8004363-8004073 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 162 |
| Conread position: | 599-814 |
| Cow position: | chr20:15947526-15947301 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 157 |
| Conread position: | 604-869 |
| Cow position: | chr20:29948391-29948645 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 73 |
| Conread position: | 623-876 |
| Cow position: | chr20:25960995-25961256 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 632-874 |
| Cow position: | chr20:3032965-3033212 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 72, 118 |
| Conread position: | 639-877 |
| Cow position: | chr20:13680149-13679904 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 706-876 |
| Cow position: | chr20:3684502-3684335 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 903-1065 |
| Cow position: | chr20:18315278-18315125 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.