Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 3-342 |
| Cow position: | chr21:23809125-23809477 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 7-612 |
| Cow position: | chr21:5016687-5016038 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 416 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 7-746 |
| Cow position: | chr21:28530203-28529408 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 469 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr21:2509997-2510923 (view UCSC Genome Browser custom track) |
| Alignm length: | 936 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 7-876 |
| Cow position: | chr21:26639115-26638193 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 11-876 |
| Cow position: | chr21:2415606-2416500 (view UCSC Genome Browser custom track) |
| Alignm length: | 908 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 12-876 |
| Cow position: | chr21:4182915-4183792 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 628 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 29-359 |
| Cow position: | chr21:34292212-34292533 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 29-876 |
| Cow position: | chr21:4590572-4589719 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 32-861 |
| Cow position: | chr21:2717255-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 32-874 |
| Cow position: | chr21:4223263-4222417 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 32-876 |
| Cow position: | chr21:4076273-4077111 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 33-874 |
| Cow position: | chr21:47938893-47939746 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 33-876 |
| Cow position: | chr21:13124568-13123732 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 40-771 |
| Cow position: | chr21:1190452-1191214 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 44-876 |
| Cow position: | chr21:2884325-2883476 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 45-404 |
| Cow position: | chr21:19609494-19609856 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 45-876 |
| Cow position: | chr21:11504967-11505859 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 47-897 |
| Cow position: | chr21:7268120-7267251 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 56-874 |
| Cow position: | chr21:37044313-37045180 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 70-400 |
| Cow position: | chr21:4455534-4455855 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 149, 20 |
| Conread position: | 72-876 |
| Cow position: | chr21:47947512-47948381 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 365 |
| Conread position: | 85-876 |
| Cow position: | chr21:145368-146195 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 144-868 |
| Cow position: | chr21:48115612-48116365 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 145-876 |
| Cow position: | chr21:3426019-3426757 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 145-876 |
| Cow position: | chr21:12056518-12055729 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 511 |
| Conread position: | 148-845 |
| Cow position: | chr21:3614835-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 149-876 |
| Cow position: | chr21:2530602-2529856 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 155 |
| Conread position: | 149-876 |
| Cow position: | chr21:35595898-35596640 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 233 |
| Conread position: | 156-876 |
| Cow position: | chr21:10566199-10566945 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 158-417 |
| Cow position: | chr21:30560791-30561050 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 158-868 |
| Cow position: | chr21:31560124-31559390 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 158-869 |
| Cow position: | chr21:10849602-10850345 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-869 |
| Cow position: | chr21:33250917-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 159-670 |
| Cow position: | chr21:40272288-40271762 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 160-335 |
| Cow position: | chr21:18820580-18820403 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 160-505 |
| Cow position: | chr21:2542354-2541998 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 240 |
| Conread position: | 164-503 |
| Cow position: | chr21:35089223-35089574 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 164-856 |
| Cow position: | chr21:33754831-33755555 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 478 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 261, 53 |
| Conread position: | 164-869 |
| Cow position: | chr21:21948278-21947536 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 475 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 164-874 |
| Cow position: | chr21:1292653-1291921 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 200 |
| Conread position: | 164-876 |
| Cow position: | chr21:2769930-2769189 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 164-876 |
| Cow position: | chr21:20745200-20744493 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 164-882 |
| Cow position: | chr21:358551-359297 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 166-876 |
| Cow position: | chr21:34259672-34258958 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 204 |
| Conread position: | 167-869 |
| Cow position: | chr21:3778305-3779031 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 176-527 |
| Cow position: | chr21:29086049-29086387 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 177-864 |
| Cow position: | chr21:25993057-25992371 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 441 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 172, 24 |
| Conread position: | 200-526 |
| Cow position: | chr21:41952742-41953076 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 203-712 |
| Cow position: | chr21:2501503-2502030 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 295-736 |
| Cow position: | chr21:17572577-17573053 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 154 |
| Conread position: | 295-804 |
| Cow position: | chr21:27708409-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 295-876 |
| Cow position: | chr21:2476860-2476255 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 179 |
| Conread position: | 295-876 |
| Cow position: | chr21:4090296-4090921 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 213 |
| Conread position: | 295-876 |
| Cow position: | chr21:46915239-46915860 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 205 |
| Conread position: | 302-840 |
| Cow position: | chr21:26819357-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 329 |
| Conread position: | 304-876 |
| Cow position: | chr21:11453994-11453384 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 6 |
| Conread position: | 306-876 |
| Cow position: | chr21:39424729-39425335 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 189 |
| Conread position: | 307-806 |
| Cow position: | chr21:21516875-21517392 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 358-876 |
| Cow position: | chr21:2789259-2788720 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 358-876 |
| Cow position: | chr21:30600193-30599652 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 364-876 |
| Cow position: | chr21:34292744-34293288 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 412 |
| Conread position: | 378-876 |
| Cow position: | chr21:23811655-23812147 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 393-913 |
| Cow position: | chr21:9891370-9891901 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 411-876 |
| Cow position: | chr21:30561577-30562074 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 368 |
| Conread position: | 433-874 |
| Cow position: | chr21:36714437-36714899 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 497-876 |
| Cow position: | chr21:2541548-2541142 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 308 |
| Conread position: | 542-876 |
| Cow position: | chr21:4456747-4457098 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 206 |
| Conread position: | 604-861 |
| Cow position: | chr21:27282379-27282653 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 604-876 |
| Cow position: | chr21:6339558-6339838 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 604-876 |
| Cow position: | chr21:8678368-8678088 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 604-876 |
| Cow position: | chr21:21914277-21914558 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 66, 246 |
| Conread position: | 604-915 |
| Cow position: | chr21:2674635-2674322 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 672-876 |
| Cow position: | chr21:40271615-40271405 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 712-876 |
| Cow position: | chr21:3798263-3798099 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 721-876 |
| Cow position: | chr21:1191280-1191435 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 893-1065 |
| Cow position: | chr21:23812315-23812491 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 896-1066 |
| Cow position: | chr21:359477-359650 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 897-1061 |
| Cow position: | chr21:29217-29377 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 899-1065 |
| Cow position: | chr21:30226464-30226625 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 156, 23 |
| Conread position: | 899-1078 |
| Cow position: | chr21:2540963-2540785 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 45 |
Show alignments to all cow chromosomes.