Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-369
Cow position:
Alignm length: 376
Alignm identity: 232
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 85

Conread position: 1-860
Cow position:
Alignm length: 896
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 4-876
Cow position:
Alignm length: 943
Alignm identity: 624
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 43

Conread position: 7-283
Cow position:
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 92

Conread position: 7-313
Cow position:
Alignm length: 311
Alignm identity: 207
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 37, 58

Conread position: 7-874
Cow position:
Alignm length: 908
Alignm identity: 634
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 93

Conread position: 7-876
Cow position:
Alignm length: 925
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 38

Conread position: 7-876
Cow position:
Alignm length: 904
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position:
Alignm length: 930
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 38

Conread position: 7-876
Cow position:
Alignm length: 914
Alignm identity: 620
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 7-876
Cow position:
Alignm length: 946
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 939
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 7-876
Cow position:
Alignm length: 932
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 11-876
Cow position:
Alignm length: 933
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 14-587
Cow position:
Alignm length: 593
Alignm identity: 379
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 32, 91

Conread position: 26-876
Cow position:
Alignm length: 910
Alignm identity: 617
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 60

Conread position: 32-520
Cow position:
Alignm length: 500
Alignm identity: 333
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 64

Conread position: 45-835
Cow position:
Alignm length: 829
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 55

Conread position: 45-876
Cow position:
Alignm length: 895
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position:
Alignm length: 883
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 56-704
Cow position:
Alignm length: 705
Alignm identity: 444
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 8, 28

Conread position: 72-816
Cow position:
Alignm length: 786
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 26

Conread position: 72-874
Cow position:
Alignm length: 833
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 79-331
Cow position:
Alignm length: 257
Alignm identity: 175
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 18

Conread position: 144-876
Cow position:
Alignm length: 779
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 76

Conread position: 145-876
Cow position:
Alignm length: 769
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 8

Conread position: 152-670
Cow position:
Alignm length: 541
Alignm identity: 327
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 184

Conread position: 154-611
Cow position:
Alignm length: 477
Alignm identity: 323
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 161

Conread position: 155-876
Cow position:
Alignm length: 760
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 63

Conread position: 158-479
Cow position:
Alignm length: 339
Alignm identity: 226
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 65, 59

Conread position: 158-672
Cow position:
Alignm length: 549
Alignm identity: 358
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 58, 178

Conread position: 158-679
Cow position:
Alignm length: 555
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 98

Conread position: 158-869
Cow position:
Alignm length: 744
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 756
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 756
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 755
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 172

Conread position: 158-876
Cow position:
Alignm length: 757
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 136

Conread position: 164-352
Cow position:
Alignm length: 191
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 164-403
Cow position:
Alignm length: 246
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 53

Conread position: 164-872
Cow position:
Alignm length: 734
Alignm identity: 456
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 63, 16

Conread position: 164-875
Cow position:
Alignm length: 752
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 53

Conread position: 164-876
Cow position:
Alignm length: 769
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 474

Conread position: 164-876
Cow position:
Alignm length: 761
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 204

Conread position: 164-876
Cow position:
Alignm length: 753
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 164-876
Cow position:
Alignm length: 760
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 17

Conread position: 164-876
Cow position:
Alignm length: 740
Alignm identity: 470
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 33, 41

Conread position: 164-876
Cow position:
Alignm length: 778
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 353

Conread position: 164-905
Cow position:
Alignm length: 784
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 51

Conread position: 167-612
Cow position:
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 209

Conread position: 167-876
Cow position:
Alignm length: 739
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 47

Conread position: 168-686
Cow position:
Alignm length: 543
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 318

Conread position: 176-869
Cow position:
Alignm length: 729
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 181-876
Cow position:
Alignm length: 715
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 69

Conread position: 184-359
Cow position:
Alignm length: 178
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 185-875
Cow position:
Alignm length: 717
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 32

Conread position: 185-876
Cow position:
Alignm length: 716
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 199

Conread position: 210-594
Cow position:
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 166

Conread position: 239-876
Cow position:
Alignm length: 670
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 138

Conread position: 248-868
Cow position:
Alignm length: 652
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 18

Conread position: 253-876
Cow position:
Alignm length: 661
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 11

Conread position: 255-876
Cow position:
Alignm length: 661
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 431

Conread position: 256-454
Cow position:
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 274-506
Cow position:
Alignm length: 244
Alignm identity: 172
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 100, 68

Conread position: 276-741
Cow position:
Alignm length: 480
Alignm identity: 303
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 25

Conread position: 280-874
Cow position:
Alignm length: 626
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 160

Conread position: 295-818
Cow position:
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 496

Conread position: 302-668
Cow position:
Alignm length: 385
Alignm identity: 260
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 144, 59

Conread position: 306-876
Cow position:
Alignm length: 597
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 24

Conread position: 310-876
Cow position:
Alignm length: 606
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 42

Conread position: 344-862
Cow position:
Alignm length: 551
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 13

Conread position: 358-869
Cow position:
Alignm length: 546
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 366-876
Cow position:
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 228

Conread position: 367-853
Cow position:
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 24

Conread position: 372-694
Cow position:
Alignm length: 348
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 80, 202

Conread position: 373-876
Cow position:
Alignm length: 515
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 383

Conread position: 373-876
Cow position:
Alignm length: 535
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 316

Conread position: 375-876
Cow position:
Alignm length: 512
Alignm identity: 312
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 43

Conread position: 380-876
Cow position:
Alignm length: 528
Alignm identity: 339
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 111, 102

Conread position: 398-876
Cow position:
Alignm length: 509
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 377

Conread position: 411-874
Cow position:
Alignm length: 508
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 387

Conread position: 418-876
Cow position:
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 98

Conread position: 493-877
Cow position:
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 255

Conread position: 542-876
Cow position:
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 225

Conread position: 543-846
Cow position:
Alignm length: 320
Alignm identity: 227
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 219

Conread position: 558-876
Cow position:
Alignm length: 340
Alignm identity: 241
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 36, 210

Conread position: 570-876
Cow position:
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 259

Conread position: 585-876
Cow position:
Alignm length: 300
Alignm identity: 195
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 89, 233

Conread position: 601-876
Cow position:
Alignm length: 278
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 49

Conread position: 604-869
Cow position:
Alignm length: 274
Alignm identity: 200
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 116, 130

Conread position: 604-875
Cow position:
Alignm length: 280
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 97

Conread position: 604-876
Cow position:
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 159

Conread position: 619-874
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 58, 0

Conread position: 626-876
Cow position:
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 133

Conread position: 639-853
Cow position:
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 135

Conread position: 706-876
Cow position:
Alignm length: 172
Alignm identity: 138
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 51, 41

Conread position: 706-876
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 47

Conread position: 707-876
Cow position:
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 709-876
Cow position:
Alignm length: 169
Alignm identity: 130
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 38

Conread position: 715-856
Cow position:
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 748-876
Cow position:
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 872-1055
Cow position:
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 886-1055
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 892-1065
Cow position:
Alignm length: 178
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 56

Conread position: 896-1056
Cow position:
Alignm length: 162
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 118, 49

Conread position: 897-1064
Cow position:
Alignm length: 170
Alignm identity: 133
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 159, 50

Conread position: 899-1055
Cow position:
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.