Cow genome map
Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
Conread position: | 3-383 |
Cow position: | chr23:2573479-2573856 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 254 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 11, 41 |
Conread position: | 7-876 |
Cow position: | chr23:4433645-4434558 (view UCSC Genome Browser custom track) |
Alignm length: | 926 |
Alignm identity: | 617 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 92 |
Conread position: | 7-876 |
Cow position: | chr23:19951415-19950484 (view UCSC Genome Browser custom track) |
Alignm length: | 941 |
Alignm identity: | 617 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 78 |
Conread position: | 7-876 |
Cow position: | chr23:20301380-20302312 (view UCSC Genome Browser custom track) |
Alignm length: | 943 |
Alignm identity: | 613 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 25 |
Conread position: | 10-876 |
Cow position: | chr23:22148075-22147151 (view UCSC Genome Browser custom track) |
Alignm length: | 931 |
Alignm identity: | 615 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 94 |
Conread position: | 14-581 |
Cow position: | chr23:14975587-14974984 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 392 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 50, 84 |
Conread position: | 19-876 |
Cow position: | chr23:1025832-1024961 (view UCSC Genome Browser custom track) |
Alignm length: | 896 |
Alignm identity: | 628 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 80 |
Conread position: | 55-357 |
Cow position: | chr23:810379-810677 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 217 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 9, 44 |
Conread position: | 68-876 |
Cow position: | chr23:28216523-28217389 (view UCSC Genome Browser custom track) |
Alignm length: | 873 |
Alignm identity: | 566 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 15 |
Conread position: | 78-674 |
Cow position: | chr23:31595894-31595288 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 19 |
Conread position: | 103-876 |
Cow position: | chr23:5875452-5874675 (view UCSC Genome Browser custom track) |
Alignm length: | 812 |
Alignm identity: | 559 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 32 |
Conread position: | 145-876 |
Cow position: | chr23:3012973-3013745 (view UCSC Genome Browser custom track) |
Alignm length: | 786 |
Alignm identity: | 542 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 235 |
Conread position: | 149-872 |
Cow position: | chr23:34174539-34175275 (view UCSC Genome Browser custom track) |
Alignm length: | 753 |
Alignm identity: | 466 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 30, 67 |
Conread position: | 154-759 |
Cow position: | chr23:19017067-19017675 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 398 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 85, 50 |
Conread position: | 156-528 |
Cow position: | chr23:2756853-2757224 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 253 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 145, 8 |
Conread position: | 156-581 |
Cow position: | chr23:14966601-14966188 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 302 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 67, 45 |
Conread position: | 158-504 |
Cow position: | chr23:15176404-15176751 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 242 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 9, 62 |
Conread position: | 158-676 |
Cow position: | chr23:1140917-1141444 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 357 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 182, 11 |
Conread position: | 158-869 |
Cow position: | chr23:15524973-15525702 (view UCSC Genome Browser custom track) |
Alignm length: | 749 |
Alignm identity: | 515 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 129 |
Conread position: | 158-869 |
Cow position: | chr23:19488882-19489634 (view UCSC Genome Browser custom track) |
Alignm length: | 759 |
Alignm identity: | 537 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 158-869 |
Cow position: | chr23:28912762-28913489 (view UCSC Genome Browser custom track) |
Alignm length: | 749 |
Alignm identity: | 512 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 136 |
Conread position: | 158-876 |
Cow position: | chr23:4641270-4640525 (view UCSC Genome Browser custom track) |
Alignm length: | 756 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 158-876 |
Cow position: | chr23:4815433-4816174 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 521 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 59 |
Conread position: | 158-876 |
Cow position: | chr23:15220543-15219793 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 135 |
Conread position: | 158-876 |
Cow position: | chr23:36032021-36031274 (view UCSC Genome Browser custom track) |
Alignm length: | 756 |
Alignm identity: | 528 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 60 |
Conread position: | 161-876 |
Cow position: | chr23:4509450-4510176 (view UCSC Genome Browser custom track) |
Alignm length: | 753 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 138 |
Conread position: | 161-876 |
Cow position: | chr23:19333052-19332308 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 53 |
Conread position: | 162-876 |
Cow position: | chr23:3882338-3881606 (view UCSC Genome Browser custom track) |
Alignm length: | 748 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 55 |
Conread position: | 164-862 |
Cow position: | chr23:2339763-2340479 (view UCSC Genome Browser custom track) |
Alignm length: | 735 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 50 |
Conread position: | 164-876 |
Cow position: | chr23:2796200-2795466 (view UCSC Genome Browser custom track) |
Alignm length: | 751 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 96 |
Conread position: | 164-876 |
Cow position: | chr23:16617478-16616750 (view UCSC Genome Browser custom track) |
Alignm length: | 752 |
Alignm identity: | 508 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 37 |
Conread position: | 166-704 |
Cow position: | chr23:2765984-2765460 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 26 |
Conread position: | 166-869 |
Cow position: | chr23:11777846-11778562 (view UCSC Genome Browser custom track) |
Alignm length: | 733 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 51 |
Conread position: | 166-876 |
Cow position: | chr23:2027764-2027020 (view UCSC Genome Browser custom track) |
Alignm length: | 754 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 33 |
Conread position: | 175-874 |
Cow position: | chr23:989260-988549 (view UCSC Genome Browser custom track) |
Alignm length: | 737 |
Alignm identity: | 518 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 63 |
Conread position: | 176-876 |
Cow position: | chr23:27398874-27399603 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 507 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 41 |
Conread position: | 196-876 |
Cow position: | chr23:4276357-4277054 (view UCSC Genome Browser custom track) |
Alignm length: | 713 |
Alignm identity: | 506 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 8 |
Conread position: | 197-518 |
Cow position: | chr23:2045428-2045743 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 233 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 22, 37 |
Conread position: | 197-698 |
Cow position: | chr23:2715727-2716262 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 20 |
Conread position: | 201-445 |
Cow position: | chr23:8981413-8981183 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 176 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 153, 0 |
Conread position: | 281-876 |
Cow position: | chr23:4359299-4359929 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 9 |
Conread position: | 366-779 |
Cow position: | chr23:22876070-22875632 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 302 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 33, 133 |
Conread position: | 366-869 |
Cow position: | chr23:967790-967253 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 415 |
Conread position: | 372-856 |
Cow position: | chr23:7273225-7273715 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 109 |
Conread position: | 384-675 |
Cow position: | chr23:1330710-1330399 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 228 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 69, 215 |
Conread position: | 388-876 |
Cow position: | chr23:5779506-5778988 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 294 |
Conread position: | 396-876 |
Cow position: | chr23:2574153-2574635 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 338 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 59, 86 |
Conread position: | 398-871 |
Cow position: | chr23:16481761-16481278 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 331 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 54, 102 |
Conread position: | 409-868 |
Cow position: | chr23:30636701-30636210 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 370 |
Conread position: | 447-744 |
Cow position: | chr23:8980846-8980525 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 229 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 53, 149 |
Conread position: | 458-876 |
Cow position: | chr23:31446468-31446914 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 317 |
Conread position: | 486-876 |
Cow position: | chr23:2313551-2313139 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 7 |
Conread position: | 492-876 |
Cow position: | chr23:4888372-4888774 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 274 |
Conread position: | 512-876 |
Cow position: | chr23:15176786-15177173 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 259 |
Conread position: | 538-876 |
Cow position: | chr23:2524454-2524098 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 233 |
Conread position: | 604-873 |
Cow position: | chr23:14974743-14974465 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 201 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 604-876 |
Cow position: | chr23:14965927-14965653 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 200 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 64, 151 |
Conread position: | 604-876 |
Cow position: | chr23:20156414-20156118 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 216 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 604-876 |
Cow position: | chr23:31591988-31591704 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 214 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 17, 32 |
Conread position: | 612-876 |
Cow position: | chr23:25684231-25683962 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 209 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 21, 8 |
Conread position: | 641-869 |
Cow position: | chr23:2716259-2716480 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 169 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 29, 53 |
Conread position: | 656-876 |
Cow position: | chr23:29474682-29474458 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 171 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 13, 66 |
Conread position: | 676-876 |
Cow position: | chr23:2757487-2757693 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 157 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 30, 77 |
Conread position: | 709-872 |
Cow position: | chr23:10903462-10903623 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 122 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 730-876 |
Cow position: | chr23:31595284-31595137 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 113 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 31, 23 |
Conread position: | 886-1039 |
Cow position: | chr23:1402616-1402471 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 118 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.