Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-876 |
| Cow position: | chr24:16650030-16649132 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 647 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 7-346 |
| Cow position: | chr24:6083255-6083588 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-396 |
| Cow position: | chr24:36560950-36560558 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 7-848 |
| Cow position: | chr24:6644670-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 906 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 7-876 |
| Cow position: | chr24:6025844-6024910 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 7-876 |
| Cow position: | chr24:6433487-6434425 (view UCSC Genome Browser custom track) |
| Alignm length: | 944 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 7-876 |
| Cow position: | chr24:16085427-16084475 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 10-876 |
| Cow position: | chr24:6144648-6145554 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 30-876 |
| Cow position: | chr24:14391415-14390550 (view UCSC Genome Browser custom track) |
| Alignm length: | 887 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 44-574 |
| Cow position: | chr24:29186129-29186669 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 359 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 44-876 |
| Cow position: | chr24:19832710-19833570 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 45-868 |
| Cow position: | chr24:12236375-12237231 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 45-876 |
| Cow position: | chr24:33740051-33739152 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 48-876 |
| Cow position: | chr24:12798431-12797583 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 60-612 |
| Cow position: | chr24:37216058-37216636 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 72-612 |
| Cow position: | chr24:37301696-37301178 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 363 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 97-332 |
| Cow position: | chr24:12209192-12208959 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 50 |
| Conread position: | 97-510 |
| Cow position: | chr24:11157245-11156851 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 130, 32 |
| Conread position: | 145-545 |
| Cow position: | chr24:17314893-17314482 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 7 |
| Conread position: | 145-727 |
| Cow position: | chr24:13021089-13021704 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 395 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 23, 182 |
| Conread position: | 149-592 |
| Cow position: | chr24:6057107-6057552 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 151-450 |
| Cow position: | chr24:9544259-9544554 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 151-876 |
| Cow position: | chr24:12132054-12131301 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 152-868 |
| Cow position: | chr24:32330772-32331494 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 154-874 |
| Cow position: | chr24:6335118-6335873 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 158 |
| Conread position: | 156-876 |
| Cow position: | chr24:12161313-12162061 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 158-417 |
| Cow position: | chr24:6357453-6357706 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-868 |
| Cow position: | chr24:14385175-14384436 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 158-876 |
| Cow position: | chr24:12085657-12086383 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 158-876 |
| Cow position: | chr24:33932785-33933551 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 164-594 |
| Cow position: | chr24:38635187-38635622 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 20 |
| Conread position: | 164-607 |
| Cow position: | chr24:5993556-5993079 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 350 |
| Conread position: | 164-838 |
| Cow position: | chr24:6351637-6352324 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 450 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 164-860 |
| Cow position: | chr24:15392869-15392155 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 362 |
| Conread position: | 164-875 |
| Cow position: | chr24:35842149-35841438 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 50 |
| Conread position: | 164-876 |
| Cow position: | chr24:149150-148434 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 165-612 |
| Cow position: | chr24:32126043-32125609 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 166-362 |
| Cow position: | chr24:36707072-36707265 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 167-536 |
| Cow position: | chr24:14583558-14583919 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 179-876 |
| Cow position: | chr24:35839140-35838431 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 184-794 |
| Cow position: | chr24:13532059-13531433 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 184-861 |
| Cow position: | chr24:17187025-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 33 |
| Conread position: | 185-788 |
| Cow position: | chr24:12289259-12288632 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 32 |
| Conread position: | 185-876 |
| Cow position: | chr24:39677900-39678594 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 196-876 |
| Cow position: | chr24:1447060-1447741 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 21 |
| Conread position: | 198-868 |
| Cow position: | chr24:4416050-4415352 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 227-876 |
| Cow position: | chr24:40653913-40654571 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 427 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 253-876 |
| Cow position: | chr24:22792699-22793357 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 295-607 |
| Cow position: | chr24:20267778-20268116 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 295-876 |
| Cow position: | chr24:44017106-44017731 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 496 |
| Conread position: | 302-853 |
| Cow position: | chr24:7060681-7061262 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 302-876 |
| Cow position: | chr24:9189161-9188546 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 486 |
| Conread position: | 302-876 |
| Cow position: | chr24:12114460-12113861 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 309-876 |
| Cow position: | chr24:6083593-6084202 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 347-876 |
| Cow position: | chr24:36707486-36708032 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 348-680 |
| Cow position: | chr24:12207767-12208115 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 366-607 |
| Cow position: | chr24:35991008-35990764 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 160, 130 |
| Conread position: | 380-867 |
| Cow position: | chr24:6537228-6537716 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 380-876 |
| Cow position: | chr24:13187852-13188370 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 104 |
| Conread position: | 382-876 |
| Cow position: | chr24:12485659-12485132 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 398 |
| Conread position: | 398-876 |
| Cow position: | chr24:36560396-36559902 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 411-879 |
| Cow position: | chr24:36296863-36297357 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 317 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 458-850 |
| Cow position: | chr24:2635859-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 458-876 |
| Cow position: | chr24:8029890-8030336 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 317 |
| Conread position: | 543-876 |
| Cow position: | chr24:14584927-14585261 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 557-876 |
| Cow position: | chr24:22951982-22952321 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 210 |
| Conread position: | 591-853 |
| Cow position: | chr24:9092379-9092115 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 591-876 |
| Cow position: | chr24:40548771-40549059 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 8 |
| Conread position: | 602-876 |
| Cow position: | chr24:38635664-38635939 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 622-820 |
| Cow position: | chr24:35987421-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 622-876 |
| Cow position: | chr24:37216927-37217185 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 229 |
| Conread position: | 630-876 |
| Cow position: | chr24:12224538-12224278 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 39, 125 |
| Conread position: | 636-833 |
| Cow position: | chr24:14333038-14333241 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 642-875 |
| Cow position: | chr24:6660665-6660425 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 676-876 |
| Cow position: | chr24:17696989-17696788 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 711-876 |
| Cow position: | chr24:12335754-12335589 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 739-876 |
| Cow position: | chr24:29187331-29187468 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 887-1065 |
| Cow position: | chr24:12797414-12797243 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 169, 21 |
| Conread position: | 900-1054 |
| Cow position: | chr24:12206273-12206123 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 900-1055 |
| Cow position: | chr24:16648955-16648804 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.