Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-563 |
| Cow position: | chr25:18172551-18173144 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 99 |
| Conread position: | 1-874 |
| Cow position: | chr25:18276608-18275694 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 7-874 |
| Cow position: | chr25:26921441-26922356 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 29-594 |
| Cow position: | chr25:18302040-18302617 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 29-876 |
| Cow position: | chr25:18061303-18060459 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 44-876 |
| Cow position: | chr25:18890720-18889875 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 56-867 |
| Cow position: | chr25:17590265-17589416 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 57-876 |
| Cow position: | chr25:19916352-19917225 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 145-876 |
| Cow position: | chr25:33991688-33990918 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 270 |
| Conread position: | 158-876 |
| Cow position: | chr25:13780430-13781171 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr25:22146891-22147636 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 159-876 |
| Cow position: | chr25:8674323-8675057 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 161-873 |
| Cow position: | chr25:18092409-18093157 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 164-822 |
| Cow position: | chr25:19288946-19288268 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 412 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 167-876 |
| Cow position: | chr25:17469288-17468557 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 211 |
| Conread position: | 167-876 |
| Cow position: | chr25:18028199-18027484 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 168-860 |
| Cow position: | chr25:17561208-17560480 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 176-564 |
| Cow position: | chr25:34014934-34014536 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 176-876 |
| Cow position: | chr25:11375924-11375207 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 177-794 |
| Cow position: | chr25:26866638-26867272 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 196-877 |
| Cow position: | chr25:11934110-11933388 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 255 |
| Conread position: | 197-465 |
| Cow position: | chr25:36239659-36239931 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 159, 33 |
| Conread position: | 197-876 |
| Cow position: | chr25:26278708-26279398 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 254-876 |
| Cow position: | chr25:25506140-25506791 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 37 |
| Conread position: | 255-380 |
| Cow position: | chr25:34657489-34657364 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-876 |
| Cow position: | chr25:35362902-35362288 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 342 |
| Conread position: | 299-874 |
| Cow position: | chr25:14015724-14016304 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 302-876 |
| Cow position: | chr25:20777372-20776757 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 302-876 |
| Cow position: | chr25:32579511-32580107 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 190 |
| Conread position: | 303-704 |
| Cow position: | chr25:17563374-17562957 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 314-850 |
| Cow position: | chr25:20493903-20494473 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 318-876 |
| Cow position: | chr25:18255811-18255225 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 379 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 366-740 |
| Cow position: | chr25:18411681-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 88, 165 |
| Conread position: | 384-869 |
| Cow position: | chr25:20629195-20629705 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 395 |
| Conread position: | 404-876 |
| Cow position: | chr25:34656809-34656305 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 377 |
| Conread position: | 487-874 |
| Cow position: | chr25:36240278-36240695 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 562-820 |
| Cow position: | chr25:18173168-18173449 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 34, 207 |
| Conread position: | 606-869 |
| Cow position: | chr25:12942837-12942566 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 149 |
| Conread position: | 631-872 |
| Cow position: | chr25:23345451-23345202 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 644-876 |
| Cow position: | chr25:33665967-33665732 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 672-876 |
| Cow position: | chr25:27022635-27022425 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 706-872 |
| Cow position: | chr25:18421640-18421804 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 706-876 |
| Cow position: | chr25:18195127-18194957 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 55, 41 |
Show alignments to all cow chromosomes.