Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 7-514 |
| Cow position: | chr26:34012279-34012792 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 12-589 |
| Cow position: | chr26:9846876-9846278 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 32-876 |
| Cow position: | chr26:12575085-12574247 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 35-876 |
| Cow position: | chr26:12589299-12588402 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 45-876 |
| Cow position: | chr26:2353076-2352197 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 56-873 |
| Cow position: | chr26:30782049-30782902 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 145-876 |
| Cow position: | chr26:11254697-11253894 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 674 |
| Conread position: | 158-876 |
| Cow position: | chr26:19352101-19351352 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 160-509 |
| Cow position: | chr26:9851230-9850881 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 160-685 |
| Cow position: | chr26:9854694-9854123 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 164-536 |
| Cow position: | chr26:30590821-30590440 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 164-876 |
| Cow position: | chr26:3691243-3691961 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 166-527 |
| Cow position: | chr26:35150433-35150082 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 166-868 |
| Cow position: | chr26:9563933-9563203 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 166-876 |
| Cow position: | chr26:17397515-17396769 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 167-704 |
| Cow position: | chr26:23605461-23604915 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 178-403 |
| Cow position: | chr26:6601412-6601635 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 236-674 |
| Cow position: | chr26:3074030-3074480 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 282-588 |
| Cow position: | chr26:19998012-19998342 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 295-876 |
| Cow position: | chr26:3031271-3030667 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 332 |
| Conread position: | 298-873 |
| Cow position: | chr26:8869420-8870036 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 430 |
| Conread position: | 298-876 |
| Cow position: | chr26:2198189-2198788 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 302-658 |
| Cow position: | chr26:24201169-24201541 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 306 |
| Conread position: | 340-769 |
| Cow position: | chr26:6850576-6850119 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 346-868 |
| Cow position: | chr26:5674770-5675313 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 358-585 |
| Cow position: | chr26:12655568-12655798 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 157 |
| Conread position: | 365-874 |
| Cow position: | chr26:20254696-20255214 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 372-876 |
| Cow position: | chr26:4605554-4605021 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 375-876 |
| Cow position: | chr26:18854725-18855251 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 90 |
| Conread position: | 387-876 |
| Cow position: | chr26:15145115-15144598 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 318 |
| Conread position: | 393-876 |
| Cow position: | chr26:16904435-16904932 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 459-831 |
| Cow position: | chr26:11537115-11536719 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 153 |
| Conread position: | 488-869 |
| Cow position: | chr26:11301548-11301942 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 28, 177 |
| Conread position: | 527-876 |
| Cow position: | chr26:30589578-30589215 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 577-876 |
| Cow position: | chr26:12656150-12656438 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 100, 72 |
| Conread position: | 600-803 |
| Cow position: | chr26:21350255-21350465 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 706-876 |
| Cow position: | chr26:8918843-8919012 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 706-876 |
| Cow position: | chr26:18852212-18852382 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 728-876 |
| Cow position: | chr26:6849422-6849275 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 730-876 |
| Cow position: | chr26:12666124-12666268 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 730-876 |
| Cow position: | chr26:23603750-23603605 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 732-876 |
| Cow position: | chr26:9112756-9112900 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 735-876 |
| Cow position: | chr26:9845555-9845416 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 740-876 |
| Cow position: | chr26:4334169-4334307 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 750-876 |
| Cow position: | chr26:9849890-9849763 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 750-876 |
| Cow position: | chr26:9853400-9853274 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 753-876 |
| Cow position: | chr26:4806503-4806379 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 903-1061 |
| Cow position: | chr26:9845248-9845092 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 153, 43 |
Show alignments to all cow chromosomes.