Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-536 |
| Cow position: | chr28:2990732-2990185 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 1-822 |
| Cow position: | chr28:5811942-5812794 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 1-873 |
| Cow position: | chr28:21325025-21325934 (view UCSC Genome Browser custom track) |
| Alignm length: | 918 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 2-876 |
| Cow position: | chr28:8722221-8721304 (view UCSC Genome Browser custom track) |
| Alignm length: | 928 |
| Alignm identity: | 669 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 7-556 |
| Cow position: | chr28:7790991-7790435 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 7-876 |
| Cow position: | chr28:1952351-1953273 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 7-876 |
| Cow position: | chr28:10619860-10618971 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 7-876 |
| Cow position: | chr28:24666853-24667723 (view UCSC Genome Browser custom track) |
| Alignm length: | 899 |
| Alignm identity: | 635 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 7-877 |
| Cow position: | chr28:6781111-6780189 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 12-876 |
| Cow position: | chr28:21358264-21359145 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 44-869 |
| Cow position: | chr28:26426973-26426140 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 54-876 |
| Cow position: | chr28:8377853-8378712 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 69-876 |
| Cow position: | chr28:7900693-7901498 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 72-876 |
| Cow position: | chr28:7816563-7817347 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 84-703 |
| Cow position: | chr28:5796141-5796780 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 103-876 |
| Cow position: | chr28:15921160-15920322 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 110-831 |
| Cow position: | chr28:15681262-15682003 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 141-876 |
| Cow position: | chr28:32793003-32792236 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 144-514 |
| Cow position: | chr28:28973843-28973472 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 144-869 |
| Cow position: | chr28:3193399-3192655 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 144-876 |
| Cow position: | chr28:22261768-22261007 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 149-698 |
| Cow position: | chr28:18089617-18089047 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 223, 65 |
| Conread position: | 156-518 |
| Cow position: | chr28:15378619-15378257 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 157-876 |
| Cow position: | chr28:17387874-17388625 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 158-517 |
| Cow position: | chr28:1504034-1504397 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 158-518 |
| Cow position: | chr28:15036022-15035659 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-536 |
| Cow position: | chr28:5752766-5752379 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-581 |
| Cow position: | chr28:5115678-5115251 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-673 |
| Cow position: | chr28:13522132-13522660 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 158-725 |
| Cow position: | chr28:1168770-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-768 |
| Cow position: | chr28:29818966-29819604 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 126 |
| Conread position: | 158-859 |
| Cow position: | chr28:5565255-5565989 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 158-869 |
| Cow position: | chr28:781792-782531 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 158-869 |
| Cow position: | chr28:2082999-2083732 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 158-869 |
| Cow position: | chr28:10582587-10581850 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 158-876 |
| Cow position: | chr28:12149724-12150454 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 158-876 |
| Cow position: | chr28:13459369-13460113 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 158-876 |
| Cow position: | chr28:17668118-17667370 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr28:33251713-33252457 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 160-876 |
| Cow position: | chr28:1387994-1387251 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 164-765 |
| Cow position: | chr28:22827458-22828081 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 72 |
| Conread position: | 164-876 |
| Cow position: | chr28:34648350-34649087 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 166-876 |
| Cow position: | chr28:9953566-9954276 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 166-876 |
| Cow position: | chr28:18521064-18520320 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 167-874 |
| Cow position: | chr28:2591347-2592056 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 147 |
| Conread position: | 167-876 |
| Cow position: | chr28:14706264-14705528 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 176-612 |
| Cow position: | chr28:26007448-26007891 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 197-876 |
| Cow position: | chr28:7001436-7002133 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 242-517 |
| Cow position: | chr28:7739734-7740011 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 281-876 |
| Cow position: | chr28:14750053-14750691 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 493 |
| Conread position: | 295-876 |
| Cow position: | chr28:13441358-13440733 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 496 |
| Conread position: | 295-876 |
| Cow position: | chr28:15950500-15951123 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 494 |
| Conread position: | 317-876 |
| Cow position: | chr28:9155720-9155136 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 398-876 |
| Cow position: | chr28:9137394-9136907 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 162 |
| Conread position: | 409-869 |
| Cow position: | chr28:1815222-1814731 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 172 |
| Conread position: | 414-876 |
| Cow position: | chr28:7821915-7822401 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 461-876 |
| Cow position: | chr28:4381108-4380701 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 467-876 |
| Cow position: | chr28:24587147-24587578 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 524-876 |
| Cow position: | chr28:1504624-1504995 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 531-876 |
| Cow position: | chr28:15378216-15377848 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 239 |
| Conread position: | 540-868 |
| Cow position: | chr28:24652079-24652420 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 541-876 |
| Cow position: | chr28:2989893-2989574 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 562-871 |
| Cow position: | chr28:17195535-17195239 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 585-910 |
| Cow position: | chr28:6657463-6657127 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 604-869 |
| Cow position: | chr28:5114936-5114675 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 604-869 |
| Cow position: | chr28:12410346-12410087 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 609-876 |
| Cow position: | chr28:7740362-7740629 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 641-827 |
| Cow position: | chr28:22233788-22233595 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 641-876 |
| Cow position: | chr28:2724990-2724747 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 669-876 |
| Cow position: | chr28:12233066-12232856 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 706-869 |
| Cow position: | chr28:7790314-7790150 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 706-876 |
| Cow position: | chr28:22065763-22065597 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 715-876 |
| Cow position: | chr28:1167899-1167739 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 715-876 |
| Cow position: | chr28:5751724-5751563 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 715-876 |
| Cow position: | chr28:34593961-34594122 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 734-876 |
| Cow position: | chr28:29819735-29819877 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 770-876 |
| Cow position: | chr28:5797470-5797575 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 886-1042 |
| Cow position: | chr28:7789971-7789823 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 899-1065 |
| Cow position: | chr28:2989385-2989219 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 901-1065 |
| Cow position: | chr28:5797756-5797915 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 907-1051 |
| Cow position: | chr28:10071309-10071446 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.