Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-504
Cow position: chr29:8663488-8663987 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 7-876
Cow position: chr29:611426-610503 (view UCSC Genome Browser custom track)
Alignm length: 945
Alignm identity: 617
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 40

Conread position: 7-876
Cow position: chr29:2751170-2750303 (view UCSC Genome Browser custom track)
Alignm length: 896
Alignm identity: 633
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 7-876
Cow position: chr29:32315221-32316150 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 77

Conread position: 10-479
Cow position: chr29:42649574-42650048 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 311
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 36, 82

Conread position: 10-479
Cow position: chr29:42801434-42801908 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 310
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 36, 82

Conread position: 10-869
Cow position: chr29:5956798-5957706 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 95

Conread position: 29-373
Cow position: chr29:22318715-22318370 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 224
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 71

Conread position: 43-876
Cow position: chr29:35296115-35296983 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 41

Conread position: 45-698
Cow position: chr29:13577644-13578344 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 444
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 39

Conread position: 46-607
Cow position: chr29:45588047-45587475 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 35

Conread position: 47-876
Cow position: chr29:19652359-19653217 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 34

Conread position: 54-876
Cow position: chr29:19623987-19623138 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 72-504
Cow position: chr29:21432074-21431631 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 138-876
Cow position: chr29:4635604-4634866 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 470
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 43

Conread position: 144-876
Cow position: chr29:2689268-2690011 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 31

Conread position: 154-868
Cow position: chr29:803970-803251 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 30

Conread position: 156-864
Cow position: chr29:45459083-45459812 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 8

Conread position: 156-876
Cow position: chr29:39080349-39079603 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 158-869
Cow position: chr29:21245933-21246672 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr29:2099206-2099954 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 59

Conread position: 158-876
Cow position: chr29:10824597-10823860 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 61

Conread position: 158-876
Cow position: chr29:34800428-34799699 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 158-876
Cow position: chr29:40503619-40502871 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chr29:43321911-43322669 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-877
Cow position: chr29:26165458-26164712 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 159-876
Cow position: chr29:49115-48369 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 134

Conread position: 160-876
Cow position: chr29:103945-104676 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 343

Conread position: 164-514
Cow position: chr29:32890575-32890928 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 231
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 176

Conread position: 164-575
Cow position: chr29:34752306-34751904 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 291, 53

Conread position: 164-876
Cow position: chr29:30810927-30811638 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 29

Conread position: 166-847
Cow position: chr29:10848728-10848028 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 206

Conread position: 166-874
Cow position: chr29:35196075-35196774 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 48

Conread position: 166-876
Cow position: chr29:6267125-6266392 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 124

Conread position: 166-876
Cow position: chr29:7431848-7431106 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position: chr29:16021902-16022639 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 28

Conread position: 166-876
Cow position: chr29:16769523-16770232 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 48

Conread position: 166-876
Cow position: chr29:20250527-20251269 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 167-876
Cow position: chr29:11048660-11049387 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 217

Conread position: 167-876
Cow position: chr29:21543990-21543260 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 88

Conread position: 176-850
Cow position: chr29:27041369-27040681 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 195

Conread position: 176-862
Cow position: chr29:2841975-2841274 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 41

Conread position: 176-869
Cow position: chr29:38226372-38227082 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 42

Conread position: 176-876
Cow position: chr29:23975211-23975949 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 160

Conread position: 176-876
Cow position: chr29:25933166-25932435 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 178-876
Cow position: chr29:10648865-10648142 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 115

Conread position: 190-876
Cow position: chr29:15950781-15950082 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 33

Conread position: 197-876
Cow position: chr29:32539210-32539919 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 20

Conread position: 295-862
Cow position: chr29:27250847-27250239 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 295-876
Cow position: chr29:15895361-15894741 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 123

Conread position: 295-876
Cow position: chr29:15969655-15969041 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 295-876
Cow position: chr29:28061181-28060555 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 182

Conread position: 302-877
Cow position: chr29:16109222-16109837 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 385

Conread position: 313-875
Cow position: chr29:43366466-43365884 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 57

Conread position: 336-742
Cow position: chr29:12796919-12796498 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 301
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 39

Conread position: 345-660
Cow position: chr29:9644175-9643838 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 22, 13

Conread position: 376-874
Cow position: chr29:1714844-1715349 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 344
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 82, 14

Conread position: 458-874
Cow position: chr29:7840462-7840904 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 297
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 32, 315

Conread position: 467-853
Cow position: chr29:31180803-31181210 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 13

Conread position: 493-870
Cow position: chr29:21427354-21426955 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 286

Conread position: 493-876
Cow position: chr29:13853319-13852914 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 276

Conread position: 540-874
Cow position: chr29:17662675-17663011 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 45, 176

Conread position: 553-876
Cow position: chr29:670279-669948 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 14, 203

Conread position: 607-876
Cow position: chr29:27981085-27980808 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 70, 148

Conread position: 608-876
Cow position: chr29:19884903-19885179 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 148

Conread position: 626-854
Cow position: chr29:5983328-5983093 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 81, 133

Conread position: 627-788
Cow position: chr29:43791033-43791201 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 128

Conread position: 627-876
Cow position: chr29:14585780-14586031 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 128

Conread position: 642-869
Cow position: chr29:45587478-45587258 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 66

Conread position: 706-875
Cow position: chr29:13582011-13582180 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 55, 47

Conread position: 706-876
Cow position: chr29:2466397-2466225 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 55, 41

Conread position: 706-876
Cow position: chr29:9643819-9643650 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 142
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 55, 41

Conread position: 706-876
Cow position: chr29:18857005-18856835 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 41

Conread position: 709-876
Cow position: chr29:42650227-42650393 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 38

Conread position: 709-876
Cow position: chr29:42802087-42802253 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 38

Conread position: 735-876
Cow position: chr29:12796398-12796256 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 747-869
Cow position: chr29:410546-410423 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 899-1051
Cow position: chr29:2749929-2749784 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 48

Show alignments to all cow chromosomes.