Cow genome map
Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
Conread position: | 1-504 |
Cow position: | chr29:8663488-8663987 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 100 |
Conread position: | 7-876 |
Cow position: | chr29:611426-610503 (view UCSC Genome Browser custom track) |
Alignm length: | 945 |
Alignm identity: | 617 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 40 |
Conread position: | 7-876 |
Cow position: | chr29:2751170-2750303 (view UCSC Genome Browser custom track) |
Alignm length: | 896 |
Alignm identity: | 633 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 15 |
Conread position: | 7-876 |
Cow position: | chr29:32315221-32316150 (view UCSC Genome Browser custom track) |
Alignm length: | 937 |
Alignm identity: | 599 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 77 |
Conread position: | 10-479 |
Cow position: | chr29:42649574-42650048 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 311 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 36, 82 |
Conread position: | 10-479 |
Cow position: | chr29:42801434-42801908 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 310 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 36, 82 |
Conread position: | 10-869 |
Cow position: | chr29:5956798-5957706 (view UCSC Genome Browser custom track) |
Alignm length: | 914 |
Alignm identity: | 602 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 95 |
Conread position: | 29-373 |
Cow position: | chr29:22318715-22318370 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 224 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 14, 71 |
Conread position: | 43-876 |
Cow position: | chr29:35296115-35296983 (view UCSC Genome Browser custom track) |
Alignm length: | 882 |
Alignm identity: | 565 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 41 |
Conread position: | 45-698 |
Cow position: | chr29:13577644-13578344 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 444 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 19, 39 |
Conread position: | 46-607 |
Cow position: | chr29:45588047-45587475 (view UCSC Genome Browser custom track) |
Alignm length: | 585 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 35 |
Conread position: | 47-876 |
Cow position: | chr29:19652359-19653217 (view UCSC Genome Browser custom track) |
Alignm length: | 872 |
Alignm identity: | 585 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 34 |
Conread position: | 54-876 |
Cow position: | chr29:19623987-19623138 (view UCSC Genome Browser custom track) |
Alignm length: | 864 |
Alignm identity: | 579 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 27 |
Conread position: | 72-504 |
Cow position: | chr29:21432074-21431631 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 26 |
Conread position: | 138-876 |
Cow position: | chr29:4635604-4634866 (view UCSC Genome Browser custom track) |
Alignm length: | 767 |
Alignm identity: | 470 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 13, 43 |
Conread position: | 144-876 |
Cow position: | chr29:2689268-2690011 (view UCSC Genome Browser custom track) |
Alignm length: | 765 |
Alignm identity: | 528 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 31 |
Conread position: | 154-868 |
Cow position: | chr29:803970-803251 (view UCSC Genome Browser custom track) |
Alignm length: | 743 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 30 |
Conread position: | 156-864 |
Cow position: | chr29:45459083-45459812 (view UCSC Genome Browser custom track) |
Alignm length: | 743 |
Alignm identity: | 512 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 8 |
Conread position: | 156-876 |
Cow position: | chr29:39080349-39079603 (view UCSC Genome Browser custom track) |
Alignm length: | 761 |
Alignm identity: | 522 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 138 |
Conread position: | 158-869 |
Cow position: | chr29:21245933-21246672 (view UCSC Genome Browser custom track) |
Alignm length: | 752 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 158-876 |
Cow position: | chr29:2099206-2099954 (view UCSC Genome Browser custom track) |
Alignm length: | 759 |
Alignm identity: | 533 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 59 |
Conread position: | 158-876 |
Cow position: | chr29:10824597-10823860 (view UCSC Genome Browser custom track) |
Alignm length: | 754 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 61 |
Conread position: | 158-876 |
Cow position: | chr29:34800428-34799699 (view UCSC Genome Browser custom track) |
Alignm length: | 750 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 18 |
Conread position: | 158-876 |
Cow position: | chr29:40503619-40502871 (view UCSC Genome Browser custom track) |
Alignm length: | 759 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 158-876 |
Cow position: | chr29:43321911-43322669 (view UCSC Genome Browser custom track) |
Alignm length: | 766 |
Alignm identity: | 534 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 158-877 |
Cow position: | chr29:26165458-26164712 (view UCSC Genome Browser custom track) |
Alignm length: | 753 |
Alignm identity: | 525 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 159-876 |
Cow position: | chr29:49115-48369 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 526 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 134 |
Conread position: | 160-876 |
Cow position: | chr29:103945-104676 (view UCSC Genome Browser custom track) |
Alignm length: | 746 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 343 |
Conread position: | 164-514 |
Cow position: | chr29:32890575-32890928 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 231 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 51, 176 |
Conread position: | 164-575 |
Cow position: | chr29:34752306-34751904 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 271 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 291, 53 |
Conread position: | 164-876 |
Cow position: | chr29:30810927-30811638 (view UCSC Genome Browser custom track) |
Alignm length: | 739 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 29 |
Conread position: | 166-847 |
Cow position: | chr29:10848728-10848028 (view UCSC Genome Browser custom track) |
Alignm length: | 723 |
Alignm identity: | 511 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 206 |
Conread position: | 166-874 |
Cow position: | chr29:35196075-35196774 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 513 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 48 |
Conread position: | 166-876 |
Cow position: | chr29:6267125-6266392 (view UCSC Genome Browser custom track) |
Alignm length: | 747 |
Alignm identity: | 511 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 124 |
Conread position: | 166-876 |
Cow position: | chr29:7431848-7431106 (view UCSC Genome Browser custom track) |
Alignm length: | 750 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 51 |
Conread position: | 166-876 |
Cow position: | chr29:16021902-16022639 (view UCSC Genome Browser custom track) |
Alignm length: | 752 |
Alignm identity: | 507 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 28 |
Conread position: | 166-876 |
Cow position: | chr29:16769523-16770232 (view UCSC Genome Browser custom track) |
Alignm length: | 742 |
Alignm identity: | 513 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 48 |
Conread position: | 166-876 |
Cow position: | chr29:20250527-20251269 (view UCSC Genome Browser custom track) |
Alignm length: | 749 |
Alignm identity: | 502 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 51 |
Conread position: | 167-876 |
Cow position: | chr29:11048660-11049387 (view UCSC Genome Browser custom track) |
Alignm length: | 743 |
Alignm identity: | 529 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 217 |
Conread position: | 167-876 |
Cow position: | chr29:21543990-21543260 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 532 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 88 |
Conread position: | 176-850 |
Cow position: | chr29:27041369-27040681 (view UCSC Genome Browser custom track) |
Alignm length: | 709 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 195 |
Conread position: | 176-862 |
Cow position: | chr29:2841975-2841274 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 41 |
Conread position: | 176-869 |
Cow position: | chr29:38226372-38227082 (view UCSC Genome Browser custom track) |
Alignm length: | 736 |
Alignm identity: | 503 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 42 |
Conread position: | 176-876 |
Cow position: | chr29:23975211-23975949 (view UCSC Genome Browser custom track) |
Alignm length: | 743 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 160 |
Conread position: | 176-876 |
Cow position: | chr29:25933166-25932435 (view UCSC Genome Browser custom track) |
Alignm length: | 740 |
Alignm identity: | 515 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 41 |
Conread position: | 178-876 |
Cow position: | chr29:10648865-10648142 (view UCSC Genome Browser custom track) |
Alignm length: | 733 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 115 |
Conread position: | 190-876 |
Cow position: | chr29:15950781-15950082 (view UCSC Genome Browser custom track) |
Alignm length: | 715 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 33 |
Conread position: | 197-876 |
Cow position: | chr29:32539210-32539919 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 502 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 20 |
Conread position: | 295-862 |
Cow position: | chr29:27250847-27250239 (view UCSC Genome Browser custom track) |
Alignm length: | 611 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 27 |
Conread position: | 295-876 |
Cow position: | chr29:15895361-15894741 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 123 |
Conread position: | 295-876 |
Cow position: | chr29:15969655-15969041 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 27 |
Conread position: | 295-876 |
Cow position: | chr29:28061181-28060555 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 182 |
Conread position: | 302-877 |
Cow position: | chr29:16109222-16109837 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 385 |
Conread position: | 313-875 |
Cow position: | chr29:43366466-43365884 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 57 |
Conread position: | 336-742 |
Cow position: | chr29:12796919-12796498 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 301 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 20, 39 |
Conread position: | 345-660 |
Cow position: | chr29:9644175-9643838 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 236 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 22, 13 |
Conread position: | 376-874 |
Cow position: | chr29:1714844-1715349 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 344 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 82, 14 |
Conread position: | 458-874 |
Cow position: | chr29:7840462-7840904 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 297 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 32, 315 |
Conread position: | 467-853 |
Cow position: | chr29:31180803-31181210 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 13 |
Conread position: | 493-870 |
Cow position: | chr29:21427354-21426955 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 286 |
Conread position: | 493-876 |
Cow position: | chr29:13853319-13852914 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 276 |
Conread position: | 540-874 |
Cow position: | chr29:17662675-17663011 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 254 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 45, 176 |
Conread position: | 553-876 |
Cow position: | chr29:670279-669948 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 206 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 14, 203 |
Conread position: | 607-876 |
Cow position: | chr29:27981085-27980808 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 203 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 70, 148 |
Conread position: | 608-876 |
Cow position: | chr29:19884903-19885179 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 148 |
Conread position: | 626-854 |
Cow position: | chr29:5983328-5983093 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 182 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 81, 133 |
Conread position: | 627-788 |
Cow position: | chr29:43791033-43791201 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 129 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 50, 128 |
Conread position: | 627-876 |
Cow position: | chr29:14585780-14586031 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 188 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 46, 128 |
Conread position: | 642-869 |
Cow position: | chr29:45587478-45587258 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 166 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 32, 66 |
Conread position: | 706-875 |
Cow position: | chr29:13582011-13582180 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 133 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 55, 47 |
Conread position: | 706-876 |
Cow position: | chr29:2466397-2466225 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 136 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 55, 41 |
Conread position: | 706-876 |
Cow position: | chr29:9643819-9643650 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 142 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 55, 41 |
Conread position: | 706-876 |
Cow position: | chr29:18857005-18856835 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 135 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 55, 41 |
Conread position: | 709-876 |
Cow position: | chr29:42650227-42650393 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 134 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 52, 38 |
Conread position: | 709-876 |
Cow position: | chr29:42802087-42802253 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 136 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 52, 38 |
Conread position: | 735-876 |
Cow position: | chr29:12796398-12796256 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 112 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 747-869 |
Cow position: | chr29:410546-410423 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 101 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 899-1051 |
Cow position: | chr29:2749929-2749784 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 123 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 19, 48 |
Show alignments to all cow chromosomes.