Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039L19.5 |
| Conread position: | 1-876 |
| Cow position: | chr4:28829971-28830861 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 7-873 |
| Cow position: | chr4:46663133-46664024 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 644 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 7-876 |
| Cow position: | chr4:157429-158347 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr4:6269721-6268796 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr4:30308534-30307627 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 7-876 |
| Cow position: | chr4:47765272-47764338 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 9-372 |
| Cow position: | chr4:4168437-4168781 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 10-876 |
| Cow position: | chr4:21339046-21338172 (view UCSC Genome Browser custom track) |
| Alignm length: | 908 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 44-868 |
| Cow position: | chr4:29532744-29531890 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 45-876 |
| Cow position: | chr4:101981-101101 (view UCSC Genome Browser custom track) |
| Alignm length: | 897 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 45-876 |
| Cow position: | chr4:527933-528825 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 45-876 |
| Cow position: | chr4:601935-602825 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 45-876 |
| Cow position: | chr4:1931655-1930792 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 54-876 |
| Cow position: | chr4:354894-355742 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 54-876 |
| Cow position: | chr4:16358888-16359715 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 63-876 |
| Cow position: | chr4:16055551-16056433 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 146-876 |
| Cow position: | chr4:34185787-34185039 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 219 |
| Conread position: | 152-682 |
| Cow position: | chr4:60631159-60630625 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 224, 65 |
| Conread position: | 152-862 |
| Cow position: | chr4:60672984-60673687 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 156-869 |
| Cow position: | chr4:43880192-43880934 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 157-578 |
| Cow position: | chr4:57978504-57978931 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 158-581 |
| Cow position: | chr4:41118209-41118646 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-607 |
| Cow position: | chr4:46713250-46712796 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-782 |
| Cow position: | chr4:1050540-1049881 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 158-849 |
| Cow position: | chr4:43320555-43319831 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 158-862 |
| Cow position: | chr4:36895455-36896191 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 158-869 |
| Cow position: | chr4:41330522-41331262 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-869 |
| Cow position: | chr4:45050214-45049473 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 158-876 |
| Cow position: | chr4:3960678-3961423 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr4:6491263-6490533 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 158-876 |
| Cow position: | chr4:13491655-13492408 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr4:18515971-18516728 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 158-876 |
| Cow position: | chr4:24446114-24445369 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 59 |
| Conread position: | 158-876 |
| Cow position: | chr4:25600518-25599787 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 158-876 |
| Cow position: | chr4:44724174-44724915 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 158-876 |
| Cow position: | chr4:48025487-48026229 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 160-518 |
| Cow position: | chr4:54955041-54955418 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 164-597 |
| Cow position: | chr4:21358757-21359180 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 164-859 |
| Cow position: | chr4:3124837-3125595 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 626 |
| Conread position: | 164-868 |
| Cow position: | chr4:1371896-1371180 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 164-876 |
| Cow position: | chr4:8599033-8598325 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 53 |
| Conread position: | 164-876 |
| Cow position: | chr4:40825162-40824421 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 473 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 166-876 |
| Cow position: | chr4:4905245-4905978 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 166-876 |
| Cow position: | chr4:33492901-33493640 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 176-875 |
| Cow position: | chr4:66925116-66925830 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 208 |
| Conread position: | 181-702 |
| Cow position: | chr4:58883562-58883030 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 183, 36 |
| Conread position: | 211-856 |
| Cow position: | chr4:31668468-31669122 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 105 |
| Conread position: | 254-876 |
| Cow position: | chr4:39272748-39272105 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 422 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 157 |
| Conread position: | 275-876 |
| Cow position: | chr4:1464724-1464093 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 295-876 |
| Cow position: | chr4:13547231-13547861 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 553 |
| Conread position: | 295-876 |
| Cow position: | chr4:65224327-65223702 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 205 |
| Conread position: | 302-685 |
| Cow position: | chr4:6449668-6449256 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 228 |
| Conread position: | 302-876 |
| Cow position: | chr4:5879402-5879997 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 140 |
| Conread position: | 321-876 |
| Cow position: | chr4:47718334-47717774 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 53 |
| Conread position: | 346-722 |
| Cow position: | chr4:54190147-54190533 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 109, 8 |
| Conread position: | 356-876 |
| Cow position: | chr4:12241944-12241386 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 428 |
| Conread position: | 367-876 |
| Cow position: | chr4:22471501-22471999 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 368-876 |
| Cow position: | chr4:11394032-11393509 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 377-876 |
| Cow position: | chr4:969703-969212 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 377-876 |
| Cow position: | chr4:17926953-17926423 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 401 |
| Conread position: | 377-876 |
| Cow position: | chr4:32211473-32211999 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 380-860 |
| Cow position: | chr4:3829800-3830296 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 486-876 |
| Cow position: | chr4:18425099-18424693 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 491-745 |
| Cow position: | chr4:10408204-10408482 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 501-876 |
| Cow position: | chr4:66179554-66179156 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 275 |
| Conread position: | 543-869 |
| Cow position: | chr4:27332933-27333269 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 554-868 |
| Cow position: | chr4:26887353-26887039 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 604-873 |
| Cow position: | chr4:11618413-11618682 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 604-876 |
| Cow position: | chr4:33073545-33073278 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 70, 104 |
| Conread position: | 622-876 |
| Cow position: | chr4:496372-496125 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 622-876 |
| Cow position: | chr4:57979201-57979460 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 632-876 |
| Cow position: | chr4:60264980-60264736 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 640-876 |
| Cow position: | chr4:41119600-41119845 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 709-876 |
| Cow position: | chr4:12586963-12587130 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 716-876 |
| Cow position: | chr4:61256568-61256728 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 725-876 |
| Cow position: | chr4:9355090-9354939 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 735-876 |
| Cow position: | chr4:23493430-23493568 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 882-1065 |
| Cow position: | chr4:1463939-1463763 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 171, 30 |
| Conread position: | 899-1061 |
| Cow position: | chr4:28831032-28831195 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 899-1065 |
| Cow position: | chr4:60264558-60264393 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 153, 45 |
| Conread position: | 903-1061 |
| Cow position: | chr4:21337993-21337840 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 43 |
Show alignments to all cow chromosomes.