Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-874
Cow position:
Alignm length: 908
Alignm identity: 635
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 7-843
Cow position:
Alignm length: 905
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position:
Alignm length: 940
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position:
Alignm length: 926
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 938
Alignm identity: 617
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 935
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 78

Conread position: 7-876
Cow position:
Alignm length: 942
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 78

Conread position: 7-876
Cow position:
Alignm length: 935
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 77

Conread position: 7-901
Cow position:
Alignm length: 936
Alignm identity: 670
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 97

Conread position: 10-400
Cow position:
Alignm length: 396
Alignm identity: 247
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 87

Conread position: 10-522
Cow position:
Alignm length: 532
Alignm identity: 344
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 34, 100

Conread position: 10-595
Cow position:
Alignm length: 607
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 84

Conread position: 10-877
Cow position:
Alignm length: 923
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 55

Conread position: 12-476
Cow position:
Alignm length: 473
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 88

Conread position: 13-862
Cow position:
Alignm length: 878
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 93

Conread position: 15-876
Cow position:
Alignm length: 894
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 84

Conread position: 29-876
Cow position:
Alignm length: 883
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 43

Conread position: 32-355
Cow position:
Alignm length: 331
Alignm identity: 226
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 14, 33

Conread position: 32-704
Cow position:
Alignm length: 698
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 57

Conread position: 33-704
Cow position:
Alignm length: 704
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 67

Conread position: 33-810
Cow position:
Alignm length: 812
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 32

Conread position: 35-403
Cow position:
Alignm length: 377
Alignm identity: 243
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 46

Conread position: 35-876
Cow position:
Alignm length: 907
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 10

Conread position: 36-875
Cow position:
Alignm length: 881
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 62

Conread position: 44-830
Cow position:
Alignm length: 834
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 44-876
Cow position:
Alignm length: 869
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 45-854
Cow position:
Alignm length: 871
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position:
Alignm length: 892
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 31

Conread position: 49-783
Cow position:
Alignm length: 777
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 55

Conread position: 78-876
Cow position:
Alignm length: 831
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 126-876
Cow position:
Alignm length: 822
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 398

Conread position: 145-702
Cow position:
Alignm length: 587
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 131

Conread position: 145-861
Cow position:
Alignm length: 739
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 57

Conread position: 145-876
Cow position:
Alignm length: 798
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 298

Conread position: 145-876
Cow position:
Alignm length: 753
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 76

Conread position: 149-857
Cow position:
Alignm length: 747
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 71

Conread position: 149-870
Cow position:
Alignm length: 771
Alignm identity: 480
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 11, 71

Conread position: 152-453
Cow position:
Alignm length: 309
Alignm identity: 199
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 59

Conread position: 152-876
Cow position:
Alignm length: 793
Alignm identity: 519
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 37

Conread position: 153-869
Cow position:
Alignm length: 754
Alignm identity: 464
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 54, 176

Conread position: 154-612
Cow position:
Alignm length: 464
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 218

Conread position: 158-672
Cow position:
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 60

Conread position: 158-876
Cow position:
Alignm length: 758
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 158-876
Cow position:
Alignm length: 759
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 752
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 105

Conread position: 158-876
Cow position:
Alignm length: 752
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 51

Conread position: 158-876
Cow position:
Alignm length: 756
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 59

Conread position: 158-876
Cow position:
Alignm length: 742
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 59

Conread position: 158-876
Cow position:
Alignm length: 754
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 118

Conread position: 158-876
Cow position:
Alignm length: 770
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 753
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 135

Conread position: 158-876
Cow position:
Alignm length: 745
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 757
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 160-506
Cow position:
Alignm length: 355
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 213, 41

Conread position: 160-876
Cow position:
Alignm length: 731
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 36

Conread position: 161-750
Cow position:
Alignm length: 608
Alignm identity: 378
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 244, 56

Conread position: 162-575
Cow position:
Alignm length: 439
Alignm identity: 289
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 139

Conread position: 162-607
Cow position:
Alignm length: 462
Alignm identity: 299
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 8, 39

Conread position: 163-876
Cow position:
Alignm length: 753
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 54

Conread position: 163-876
Cow position:
Alignm length: 749
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 54

Conread position: 164-385
Cow position:
Alignm length: 228
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 154

Conread position: 164-515
Cow position:
Alignm length: 356
Alignm identity: 232
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 61, 50

Conread position: 164-675
Cow position:
Alignm length: 526
Alignm identity: 342
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 135

Conread position: 164-776
Cow position:
Alignm length: 643
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 30

Conread position: 164-876
Cow position:
Alignm length: 745
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 35

Conread position: 165-840
Cow position:
Alignm length: 712
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 19

Conread position: 166-838
Cow position:
Alignm length: 697
Alignm identity: 422
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 195, 96

Conread position: 166-851
Cow position:
Alignm length: 725
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-869
Cow position:
Alignm length: 741
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 127

Conread position: 166-869
Cow position:
Alignm length: 744
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 87

Conread position: 166-876
Cow position:
Alignm length: 750
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position:
Alignm length: 750
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position:
Alignm length: 734
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 51

Conread position: 167-876
Cow position:
Alignm length: 743
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 195

Conread position: 167-876
Cow position:
Alignm length: 734
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 138

Conread position: 167-876
Cow position:
Alignm length: 743
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 151

Conread position: 175-594
Cow position:
Alignm length: 437
Alignm identity: 274
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 45, 74

Conread position: 176-876
Cow position:
Alignm length: 740
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 220-744
Cow position:
Alignm length: 548
Alignm identity: 344
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 71

Conread position: 230-876
Cow position:
Alignm length: 670
Alignm identity: 412
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 78, 62

Conread position: 232-876
Cow position:
Alignm length: 676
Alignm identity: 418
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 25, 56

Conread position: 248-388
Cow position:
Alignm length: 143
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 125, 60

Conread position: 254-647
Cow position:
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 80

Conread position: 256-876
Cow position:
Alignm length: 661
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 239

Conread position: 269-876
Cow position:
Alignm length: 646
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 512

Conread position: 295-876
Cow position:
Alignm length: 627
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 495

Conread position: 295-876
Cow position:
Alignm length: 627
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 181

Conread position: 295-876
Cow position:
Alignm length: 623
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 252

Conread position: 295-876
Cow position:
Alignm length: 631
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 209

Conread position: 302-862
Cow position:
Alignm length: 607
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 339

Conread position: 302-872
Cow position:
Alignm length: 612
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 334

Conread position: 302-876
Cow position:
Alignm length: 610
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 189

Conread position: 302-876
Cow position:
Alignm length: 598
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 363

Conread position: 316-874
Cow position:
Alignm length: 598
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 26

Conread position: 348-865
Cow position:
Alignm length: 543
Alignm identity: 335
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 195

Conread position: 367-874
Cow position:
Alignm length: 531
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 146

Conread position: 372-876
Cow position:
Alignm length: 527
Alignm identity: 324
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 58

Conread position: 374-876
Cow position:
Alignm length: 536
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 405

Conread position: 388-787
Cow position:
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 421-876
Cow position:
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 360

Conread position: 447-876
Cow position:
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 327

Conread position: 486-876
Cow position:
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 7

Conread position: 491-862
Cow position:
Alignm length: 405
Alignm identity: 285
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 281

Conread position: 491-876
Cow position:
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 285

Conread position: 540-876
Cow position:
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 47

Conread position: 542-869
Cow position:
Alignm length: 347
Alignm identity: 248
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 45

Conread position: 591-876
Cow position:
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 8

Conread position: 604-874
Cow position:
Alignm length: 273
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 157, 31

Conread position: 604-876
Cow position:
Alignm length: 288
Alignm identity: 195
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 26

Conread position: 604-876
Cow position:
Alignm length: 282
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 43

Conread position: 606-876
Cow position:
Alignm length: 284
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 10, 47

Conread position: 613-847
Cow position:
Alignm length: 243
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 65, 138

Conread position: 635-876
Cow position:
Alignm length: 251
Alignm identity: 188
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 41, 120

Conread position: 651-876
Cow position:
Alignm length: 236
Alignm identity: 178
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 104

Conread position: 655-876
Cow position:
Alignm length: 228
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 94

Conread position: 676-874
Cow position:
Alignm length: 200
Alignm identity: 158
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 85, 29

Conread position: 720-876
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 41, 33

Conread position: 730-869
Cow position:
Alignm length: 143
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 14

Conread position: 741-876
Cow position:
Alignm length: 137
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 6

Conread position: 747-910
Cow position:
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 0

Conread position: 886-1065
Cow position:
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 170, 30

Conread position: 896-1061
Cow position:
Alignm length: 168
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 160, 50

Conread position: 899-1062
Cow position:
Alignm length: 166
Alignm identity: 131
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 154, 47

Conread position: 954-1073
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 18, 0

Show alignments to all cow chromosomes.