Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-751
Cow position:
Alignm length: 788
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 140

Conread position: 7-301
Cow position:
Alignm length: 300
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 78

Conread position: 7-361
Cow position:
Alignm length: 362
Alignm identity: 227
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 40

Conread position: 7-369
Cow position:
Alignm length: 373
Alignm identity: 234
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 37, 78

Conread position: 7-518
Cow position:
Alignm length: 527
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 83

Conread position: 7-698
Cow position:
Alignm length: 754
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 80

Conread position: 7-698
Cow position:
Alignm length: 755
Alignm identity: 483
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 929
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 926
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position:
Alignm length: 937
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 92

Conread position: 7-876
Cow position:
Alignm length: 938
Alignm identity: 620
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 92

Conread position: 10-518
Cow position:
Alignm length: 517
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 90

Conread position: 12-876
Cow position:
Alignm length: 901
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 13-399
Cow position:
Alignm length: 392
Alignm identity: 264
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 31, 88

Conread position: 24-876
Cow position:
Alignm length: 899
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 15

Conread position: 25-546
Cow position:
Alignm length: 538
Alignm identity: 345
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 21, 79

Conread position: 25-876
Cow position:
Alignm length: 917
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 80

Conread position: 26-769
Cow position:
Alignm length: 812
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 64

Conread position: 26-869
Cow position:
Alignm length: 874
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 76

Conread position: 29-598
Cow position:
Alignm length: 589
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 53

Conread position: 32-867
Cow position:
Alignm length: 865
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 33

Conread position: 32-876
Cow position:
Alignm length: 883
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 44-704
Cow position:
Alignm length: 694
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 46

Conread position: 44-775
Cow position:
Alignm length: 774
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 44-869
Cow position:
Alignm length: 858
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 44-869
Cow position:
Alignm length: 861
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 44-876
Cow position:
Alignm length: 875
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 45-514
Cow position:
Alignm length: 478
Alignm identity: 307
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 87, 36

Conread position: 47-642
Cow position:
Alignm length: 614
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 52

Conread position: 48-875
Cow position:
Alignm length: 867
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 33

Conread position: 56-876
Cow position:
Alignm length: 854
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 56-876
Cow position:
Alignm length: 892
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 58-876
Cow position:
Alignm length: 887
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 26

Conread position: 69-788
Cow position:
Alignm length: 783
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 14

Conread position: 75-876
Cow position:
Alignm length: 847
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 23

Conread position: 78-876
Cow position:
Alignm length: 866
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 62

Conread position: 87-876
Cow position:
Alignm length: 846
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 55

Conread position: 93-876
Cow position:
Alignm length: 836
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 12

Conread position: 97-542
Cow position:
Alignm length: 457
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 12

Conread position: 145-876
Cow position:
Alignm length: 800
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 387

Conread position: 148-453
Cow position:
Alignm length: 314
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 149-514
Cow position:
Alignm length: 375
Alignm identity: 240
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 90

Conread position: 149-876
Cow position:
Alignm length: 781
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 149-876
Cow position:
Alignm length: 769
Alignm identity: 472
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 67

Conread position: 151-876
Cow position:
Alignm length: 762
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 66

Conread position: 152-876
Cow position:
Alignm length: 779
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 90

Conread position: 154-772
Cow position:
Alignm length: 659
Alignm identity: 419
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 62, 9

Conread position: 155-874
Cow position:
Alignm length: 750
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 13

Conread position: 156-872
Cow position:
Alignm length: 749
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 135

Conread position: 158-441
Cow position:
Alignm length: 288
Alignm identity: 190
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 58, 134

Conread position: 158-475
Cow position:
Alignm length: 325
Alignm identity: 216
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 135

Conread position: 158-479
Cow position:
Alignm length: 334
Alignm identity: 224
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 60

Conread position: 158-518
Cow position:
Alignm length: 371
Alignm identity: 254
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 136

Conread position: 158-536
Cow position:
Alignm length: 395
Alignm identity: 261
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 65, 59

Conread position: 158-577
Cow position:
Alignm length: 437
Alignm identity: 291
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 65, 59

Conread position: 158-745
Cow position:
Alignm length: 621
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 118

Conread position: 158-773
Cow position:
Alignm length: 653
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 85

Conread position: 158-869
Cow position:
Alignm length: 749
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 60

Conread position: 158-869
Cow position:
Alignm length: 744
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 158-876
Cow position:
Alignm length: 757
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 757
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 748
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 756
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 157

Conread position: 158-876
Cow position:
Alignm length: 756
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 158-876
Cow position:
Alignm length: 757
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position:
Alignm length: 752
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 59

Conread position: 158-876
Cow position:
Alignm length: 755
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 158-876
Cow position:
Alignm length: 759
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 19

Conread position: 160-589
Cow position:
Alignm length: 440
Alignm identity: 288
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 267, 43

Conread position: 164-419
Cow position:
Alignm length: 262
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 210, 50

Conread position: 164-422
Cow position:
Alignm length: 263
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 168, 50

Conread position: 164-856
Cow position:
Alignm length: 729
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 100

Conread position: 164-865
Cow position:
Alignm length: 726
Alignm identity: 455
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 16

Conread position: 164-869
Cow position:
Alignm length: 729
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 48

Conread position: 164-876
Cow position:
Alignm length: 761
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 50

Conread position: 164-876
Cow position:
Alignm length: 749
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 165-748
Cow position:
Alignm length: 603
Alignm identity: 379
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 209, 52

Conread position: 166-874
Cow position:
Alignm length: 744
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position:
Alignm length: 784
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 349

Conread position: 166-876
Cow position:
Alignm length: 753
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 51

Conread position: 166-876
Cow position:
Alignm length: 751
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 102

Conread position: 167-869
Cow position:
Alignm length: 742
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 126

Conread position: 175-869
Cow position:
Alignm length: 732
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 116

Conread position: 176-876
Cow position:
Alignm length: 736
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 160

Conread position: 176-876
Cow position:
Alignm length: 750
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 38

Conread position: 176-876
Cow position:
Alignm length: 740
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 142

Conread position: 177-612
Cow position:
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 40

Conread position: 178-749
Cow position:
Alignm length: 594
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 179-876
Cow position:
Alignm length: 727
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 97

Conread position: 194-759
Cow position:
Alignm length: 593
Alignm identity: 364
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 20

Conread position: 195-876
Cow position:
Alignm length: 718
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 183

Conread position: 197-876
Cow position:
Alignm length: 710
Alignm identity: 450
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 20

Conread position: 222-663
Cow position:
Alignm length: 470
Alignm identity: 311
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 85, 69

Conread position: 257-876
Cow position:
Alignm length: 665
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 192

Conread position: 295-876
Cow position:
Alignm length: 627
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 205

Conread position: 295-876
Cow position:
Alignm length: 626
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 344

Conread position: 298-607
Cow position:
Alignm length: 334
Alignm identity: 227
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 198

Conread position: 349-690
Cow position:
Alignm length: 367
Alignm identity: 243
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 9

Conread position: 349-876
Cow position:
Alignm length: 555
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 25

Conread position: 365-542
Cow position:
Alignm length: 184
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 148

Conread position: 374-876
Cow position:
Alignm length: 536
Alignm identity: 346
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 82, 338

Conread position: 393-869
Cow position:
Alignm length: 503
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 411-876
Cow position:
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 368

Conread position: 443-876
Cow position:
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 314

Conread position: 447-876
Cow position:
Alignm length: 456
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 325

Conread position: 452-698
Cow position:
Alignm length: 263
Alignm identity: 180
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 460-830
Cow position:
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 28

Conread position: 470-876
Cow position:
Alignm length: 431
Alignm identity: 293
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 11, 19

Conread position: 471-869
Cow position:
Alignm length: 427
Alignm identity: 293
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 302

Conread position: 491-876
Cow position:
Alignm length: 410
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 278

Conread position: 540-759
Cow position:
Alignm length: 238
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 55, 225

Conread position: 540-876
Cow position:
Alignm length: 349
Alignm identity: 238
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 144

Conread position: 551-864
Cow position:
Alignm length: 339
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 112

Conread position: 554-876
Cow position:
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 212

Conread position: 584-853
Cow position:
Alignm length: 282
Alignm identity: 210
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 93, 15

Conread position: 585-876
Cow position:
Alignm length: 300
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 89, 170

Conread position: 602-787
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 55

Conread position: 604-849
Cow position:
Alignm length: 256
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 27

Conread position: 604-874
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 69, 98

Conread position: 604-876
Cow position:
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 151

Conread position: 604-877
Cow position:
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 157, 52

Conread position: 605-876
Cow position:
Alignm length: 282
Alignm identity: 206
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 68, 144

Conread position: 606-876
Cow position:
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 155, 100

Conread position: 608-876
Cow position:
Alignm length: 277
Alignm identity: 197
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 62, 147

Conread position: 622-876
Cow position:
Alignm length: 262
Alignm identity: 190
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 82, 136

Conread position: 630-876
Cow position:
Alignm length: 252
Alignm identity: 191
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 76, 119

Conread position: 666-876
Cow position:
Alignm length: 218
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 41, 87

Conread position: 706-876
Cow position:
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 40

Conread position: 706-876
Cow position:
Alignm length: 173
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 46

Conread position: 706-876
Cow position:
Alignm length: 173
Alignm identity: 135
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 55, 47

Conread position: 709-876
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 713-874
Cow position:
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 48, 35

Conread position: 716-906
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 64

Conread position: 764-868
Cow position:
Alignm length: 105
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 886-1061
Cow position:
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 112, 26

Conread position: 896-1065
Cow position:
Alignm length: 172
Alignm identity: 134
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 160, 50

Conread position: 896-1065
Cow position:
Alignm length: 172
Alignm identity: 138
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 157, 52

Conread position: 899-1065
Cow position:
Alignm length: 175
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 929-1065
Cow position:
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 124, 22

Show alignments to all cow chromosomes.