Cow genome map

Conread name: Ss1.1-Pig4-TMW8039L19.5

Conread position: 1-325
Cow position: chrX:31371958-31372278 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 89

Conread position: 1-675
Cow position: chrX:21586014-21586729 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 99

Conread position: 1-823
Cow position: chrX:3422476-3421591 (view UCSC Genome Browser custom track)
Alignm length: 894
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 58

Conread position: 1-876
Cow position: chrX:22526639-22525701 (view UCSC Genome Browser custom track)
Alignm length: 944
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 85

Conread position: 3-876
Cow position: chrX:5862363-5863301 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 7-369
Cow position: chrX:13032453-13032093 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 230
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 37, 78

Conread position: 7-404
Cow position: chrX:37811368-37811765 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 245
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 29, 93

Conread position: 7-581
Cow position: chrX:12704941-12704323 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 390
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 17, 40

Conread position: 7-675
Cow position: chrX:28652099-28651434 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 92

Conread position: 7-690
Cow position: chrX:28522713-28521986 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 461
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 29, 78

Conread position: 7-793
Cow position: chrX:24326174-24325325 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 538
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 37, 78

Conread position: 7-854
Cow position: chrX:12341166-12342074 (view UCSC Genome Browser custom track)
Alignm length: 919
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-874
Cow position: chrX:8478686-8479602 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-874
Cow position: chrX:27427347-27426415 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chrX:1832846-1833731 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 78

Conread position: 7-876
Cow position: chrX:2603023-2603952 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 79

Conread position: 7-876
Cow position: chrX:3085926-3084999 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position: chrX:5284756-5283832 (view UCSC Genome Browser custom track)
Alignm length: 936
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chrX:7092577-7093501 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chrX:12804881-12803961 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 7-876
Cow position: chrX:14787882-14786969 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position: chrX:16018119-16017239 (view UCSC Genome Browser custom track)
Alignm length: 906
Alignm identity: 627
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 92

Conread position: 7-876
Cow position: chrX:21339373-21340303 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 7-876
Cow position: chrX:24088365-24089305 (view UCSC Genome Browser custom track)
Alignm length: 944
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 7-876
Cow position: chrX:26401495-26400564 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 7-876
Cow position: chrX:28759651-28758738 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 10-612
Cow position: chrX:29795097-29794505 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 90

Conread position: 10-876
Cow position: chrX:22620328-22619406 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 10-876
Cow position: chrX:26768193-26767295 (view UCSC Genome Browser custom track)
Alignm length: 908
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 11-355
Cow position: chrX:31034708-31035047 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 246
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 33, 91

Conread position: 11-874
Cow position: chrX:13077715-13076796 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 74

Conread position: 11-874
Cow position: chrX:13098289-13097370 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 74

Conread position: 15-561
Cow position: chrX:9901604-9901028 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 369
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 49, 103

Conread position: 25-321
Cow position: chrX:28635548-28635263 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 74

Conread position: 25-404
Cow position: chrX:22583932-22583550 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 74

Conread position: 25-675
Cow position: chrX:12182205-12182894 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 453
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 19, 74

Conread position: 25-876
Cow position: chrX:24485421-24484509 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 65

Conread position: 29-727
Cow position: chrX:25332127-25332843 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 29-795
Cow position: chrX:39716864-39717620 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 35-876
Cow position: chrX:2100868-2101762 (view UCSC Genome Browser custom track)
Alignm length: 908
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 11

Conread position: 36-876
Cow position: chrX:21489241-21490132 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 24

Conread position: 43-876
Cow position: chrX:12281246-12280366 (view UCSC Genome Browser custom track)
Alignm length: 895
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 41

Conread position: 44-782
Cow position: chrX:23276164-23276912 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 405
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 20, 37

Conread position: 44-869
Cow position: chrX:13414078-13413220 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 44-869
Cow position: chrX:29854524-29853670 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 38

Conread position: 44-876
Cow position: chrX:969818-970669 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 45-514
Cow position: chrX:28553063-28553536 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 59

Conread position: 45-805
Cow position: chrX:8964042-8963228 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position: chrX:5395953-5395059 (view UCSC Genome Browser custom track)
Alignm length: 900
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position: chrX:8586106-8586997 (view UCSC Genome Browser custom track)
Alignm length: 899
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position: chrX:9007358-9008241 (view UCSC Genome Browser custom track)
Alignm length: 895
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 45-876
Cow position: chrX:16364113-16363221 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 53

Conread position: 55-589
Cow position: chrX:29283784-29284333 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 56-876
Cow position: chrX:31188213-31187342 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 68-876
Cow position: chrX:37848044-37848917 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 590
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 31

Conread position: 141-876
Cow position: chrX:1546071-1546838 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 76

Conread position: 142-396
Cow position: chrX:30990806-30990541 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 12

Conread position: 144-876
Cow position: chrX:16236458-16237212 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 145-788
Cow position: chrX:30046965-30046301 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 219

Conread position: 145-876
Cow position: chrX:8669697-8670495 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 520

Conread position: 145-876
Cow position: chrX:18218508-18219300 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 373

Conread position: 148-401
Cow position: chrX:30144354-30144096 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 71, 108

Conread position: 149-876
Cow position: chrX:13007479-13006722 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 120

Conread position: 149-876
Cow position: chrX:19927457-19928198 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 464
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 32, 53

Conread position: 149-876
Cow position: chrX:22894225-22893464 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 142

Conread position: 149-876
Cow position: chrX:30710502-30711256 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 46

Conread position: 150-869
Cow position: chrX:30232958-30232212 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 69

Conread position: 150-876
Cow position: chrX:19185794-19185065 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 66

Conread position: 151-837
Cow position: chrX:31197783-31198472 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 465
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 349, 17

Conread position: 158-869
Cow position: chrX:15598084-15598826 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-869
Cow position: chrX:16698453-16699196 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-869
Cow position: chrX:23456414-23455682 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 128

Conread position: 158-876
Cow position: chrX:2483481-2482735 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 58

Conread position: 158-876
Cow position: chrX:15128086-15127339 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 59

Conread position: 158-876
Cow position: chrX:21222100-21222831 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 130

Conread position: 158-876
Cow position: chrX:21828690-21829427 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chrX:23392446-23391696 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 158-876
Cow position: chrX:32095796-32095063 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 36

Conread position: 163-514
Cow position: chrX:12998419-12998070 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 51

Conread position: 164-413
Cow position: chrX:17669243-17668995 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 143, 53

Conread position: 164-590
Cow position: chrX:25186820-25187257 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 53

Conread position: 164-865
Cow position: chrX:2788054-2787339 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 445
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 69

Conread position: 164-876
Cow position: chrX:5324581-5323820 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 164-876
Cow position: chrX:21271006-21270293 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 92

Conread position: 164-876
Cow position: chrX:26527136-26527879 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 31

Conread position: 164-876
Cow position: chrX:26759430-26758702 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 165-392
Cow position: chrX:6284063-6283828 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 165-874
Cow position: chrX:22813553-22814283 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 73

Conread position: 165-876
Cow position: chrX:18532142-18532899 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 513

Conread position: 165-876
Cow position: chrX:30369815-30369114 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 52

Conread position: 166-374
Cow position: chrX:28604906-28604708 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 51

Conread position: 166-734
Cow position: chrX:41151389-41151987 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 127

Conread position: 166-873
Cow position: chrX:22131537-22130807 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 166-876
Cow position: chrX:32466412-32467155 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 155

Conread position: 167-612
Cow position: chrX:11534656-11535105 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 222

Conread position: 167-675
Cow position: chrX:26629143-26628626 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 199

Conread position: 167-876
Cow position: chrX:21602063-21602782 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 64

Conread position: 167-876
Cow position: chrX:21633393-21632684 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 119

Conread position: 167-876
Cow position: chrX:22777504-22778215 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 153

Conread position: 167-876
Cow position: chrX:24274861-24275573 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 50

Conread position: 167-876
Cow position: chrX:35017003-35017711 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 222

Conread position: 167-876
Cow position: chrX:40057886-40057162 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 25

Conread position: 175-804
Cow position: chrX:13051855-13052495 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 113

Conread position: 176-445
Cow position: chrX:318260-318528 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 41

Conread position: 176-772
Cow position: chrX:30055830-30056466 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 262

Conread position: 176-780
Cow position: chrX:28549071-28549695 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 160

Conread position: 176-876
Cow position: chrX:16274833-16275580 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 59

Conread position: 176-876
Cow position: chrX:21290304-21289588 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 200

Conread position: 176-876
Cow position: chrX:22487366-22488084 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 177-876
Cow position: chrX:24122731-24122017 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 87

Conread position: 177-876
Cow position: chrX:26504363-26505087 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 99

Conread position: 184-876
Cow position: chrX:24137196-24136496 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 136

Conread position: 192-876
Cow position: chrX:5300012-5299320 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 31

Conread position: 195-876
Cow position: chrX:31079726-31080423 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 451
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 156, 14

Conread position: 196-534
Cow position: chrX:35019849-35020188 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 178, 22

Conread position: 197-869
Cow position: chrX:26428819-26428151 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 418
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 291, 22

Conread position: 209-876
Cow position: chrX:11669227-11668539 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 11

Conread position: 215-875
Cow position: chrX:29883036-29882328 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 456
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 85, 11

Conread position: 229-829
Cow position: chrX:20699039-20698428 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 395
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 107, 145

Conread position: 235-747
Cow position: chrX:5834918-5834396 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 106

Conread position: 245-844
Cow position: chrX:37757042-37757644 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 395
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 155, 41

Conread position: 253-613
Cow position: chrX:3376975-3376603 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 118, 11

Conread position: 255-876
Cow position: chrX:31192507-31191900 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 79

Conread position: 274-876
Cow position: chrX:18955243-18954619 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 281-876
Cow position: chrX:2860530-2859898 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 353

Conread position: 282-876
Cow position: chrX:39521172-39521810 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 218

Conread position: 289-872
Cow position: chrX:17615105-17614514 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 384
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 11

Conread position: 293-876
Cow position: chrX:11465720-11465099 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 183

Conread position: 295-607
Cow position: chrX:9173085-9172750 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 222
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 177

Conread position: 295-793
Cow position: chrX:24380586-24381131 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 362
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 9, 499

Conread position: 295-876
Cow position: chrX:9193363-9192741 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 179

Conread position: 295-876
Cow position: chrX:21305235-21304623 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 272

Conread position: 297-612
Cow position: chrX:12672254-12671923 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 74, 313

Conread position: 297-876
Cow position: chrX:20316769-20316152 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 258

Conread position: 298-862
Cow position: chrX:13398832-13398227 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 41

Conread position: 299-876
Cow position: chrX:28635126-28634513 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 182

Conread position: 302-727
Cow position: chrX:20360643-20360179 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 301
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 302-876
Cow position: chrX:6873789-6873168 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 476

Conread position: 302-876
Cow position: chrX:7751194-7751803 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 192

Conread position: 302-876
Cow position: chrX:9124672-9125262 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 73

Conread position: 302-876
Cow position: chrX:12655459-12654852 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 164

Conread position: 302-876
Cow position: chrX:15180148-15179528 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 308

Conread position: 302-876
Cow position: chrX:17479235-17478620 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 485

Conread position: 325-876
Cow position: chrX:30179670-30179091 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 86

Conread position: 326-876
Cow position: chrX:20803472-20804029 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 48

Conread position: 331-876
Cow position: chrX:30174337-30173767 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 384
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 24, 46

Conread position: 346-876
Cow position: chrX:30143043-30142491 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 349-876
Cow position: chrX:12289589-12289038 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 25

Conread position: 355-856
Cow position: chrX:4795279-4795810 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 21

Conread position: 355-869
Cow position: chrX:20795964-20796501 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 360
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 72, 32

Conread position: 358-876
Cow position: chrX:30666584-30666036 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 16

Conread position: 364-874
Cow position: chrX:17668923-17668389 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 19

Conread position: 370-876
Cow position: chrX:29951197-29950670 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 7

Conread position: 374-872
Cow position: chrX:17632457-17631925 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 356
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 53, 59

Conread position: 374-876
Cow position: chrX:7029559-7030092 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 402

Conread position: 376-876
Cow position: chrX:27990405-27989884 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 186

Conread position: 383-876
Cow position: chrX:8454137-8454655 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 35

Conread position: 389-876
Cow position: chrX:6283667-6283191 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 347
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 67, 42

Conread position: 411-868
Cow position: chrX:12478132-12478613 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 360

Conread position: 431-876
Cow position: chrX:10532126-10531655 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 6

Conread position: 433-869
Cow position: chrX:23018761-23019220 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 173

Conread position: 433-901
Cow position: chrX:6909903-6909402 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 348

Conread position: 458-874
Cow position: chrX:27494162-27494609 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 320

Conread position: 458-876
Cow position: chrX:23046604-23047049 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 316

Conread position: 467-876
Cow position: chrX:7481073-7481506 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 155

Conread position: 490-869
Cow position: chrX:319960-320364 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 283

Conread position: 490-869
Cow position: chrX:30184398-30183998 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 63

Conread position: 491-876
Cow position: chrX:29873065-29872656 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 493-876
Cow position: chrX:982163-982541 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 275
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 35, 115

Conread position: 522-845
Cow position: chrX:35020512-35020857 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 149

Conread position: 527-876
Cow position: chrX:28562679-28562311 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 68

Conread position: 540-833
Cow position: chrX:6276043-6275733 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 230

Conread position: 540-876
Cow position: chrX:21794647-21794998 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 39

Conread position: 541-872
Cow position: chrX:6015906-6015564 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 83

Conread position: 550-850
Cow position: chrX:2537203-2536894 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 271

Conread position: 585-876
Cow position: chrX:5839942-5840236 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 90, 67

Conread position: 591-876
Cow position: chrX:2563245-2562954 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 73, 8

Conread position: 594-869
Cow position: chrX:29813324-29813601 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 82, 10

Conread position: 604-876
Cow position: chrX:23041492-23041220 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 109

Conread position: 604-876
Cow position: chrX:29285057-29285320 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 25

Conread position: 604-876
Cow position: chrX:35529483-35529763 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 73, 151

Conread position: 607-876
Cow position: chrX:18660156-18659879 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 154

Conread position: 608-779
Cow position: chrX:16935928-16935751 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 97, 145

Conread position: 608-876
Cow position: chrX:41411394-41411118 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 147

Conread position: 613-875
Cow position: chrX:12670227-12669963 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 63, 22

Conread position: 613-876
Cow position: chrX:22583067-22582797 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 25, 17

Conread position: 619-876
Cow position: chrX:39564291-39564028 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 140

Conread position: 626-874
Cow position: chrX:40247669-40247413 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 58, 128

Conread position: 632-876
Cow position: chrX:28603804-28603555 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 45, 113

Conread position: 640-874
Cow position: chrX:29794454-29794213 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 38, 115

Conread position: 641-876
Cow position: chrX:29947367-29947610 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 36, 114

Conread position: 656-876
Cow position: chrX:37811837-37812065 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 21, 99

Conread position: 672-876
Cow position: chrX:21586860-21587068 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 81

Conread position: 672-876
Cow position: chrX:26628339-26628129 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 34, 87

Conread position: 706-869
Cow position: chrX:35390360-35390198 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 706-870
Cow position: chrX:5336735-5336571 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 55, 41

Conread position: 706-876
Cow position: chrX:1943310-1943141 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 41

Conread position: 706-876
Cow position: chrX:16461410-16461580 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 55, 41

Conread position: 711-876
Cow position: chrX:28584718-28584883 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 50, 36

Conread position: 715-876
Cow position: chrX:12973488-12973326 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 39

Conread position: 716-876
Cow position: chrX:38146048-38146208 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 31

Conread position: 720-874
Cow position: chrX:44386218-44386377 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 26

Conread position: 725-876
Cow position: chrX:5834212-5834061 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 28

Conread position: 757-876
Cow position: chrX:31724809-31724929 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 757-876
Cow position: chrX:38576039-38575920 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 77

Conread position: 759-875
Cow position: chrX:11663719-11663603 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 886-1061
Cow position: chrX:21587265-21587439 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 22

Conread position: 886-1064
Cow position: chrX:6283009-6282834 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 139, 8

Conread position: 890-1065
Cow position: chrX:31725099-31725273 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 166, 9

Conread position: 928-1065
Cow position: chrX:2536688-2536556 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 125, 18

Show alignments to all cow chromosomes.