Cow genome map

Conread name: Ss1.1-Pig4-TMW8039M03.5

Conread position: 4-344
Cow position: chr22:11701354-11701694 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 64, 51

Conread position: 4-438
Cow position: chr22:11641027-11641461 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 55

Conread position: 4-439
Cow position: chr22:12385329-12384895 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 145, 134

Conread position: 4-511
Cow position: chr22:11701186-11701693 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 117

Conread position: 4-597
Cow position: chr22:12458355-12457762 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-684
Cow position: chr22:11640775-11641455 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 214

Conread position: 4-685
Cow position: chr22:14442045-14442723 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 403
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 54

Conread position: 4-716
Cow position: chr22:14468060-14468762 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 377

Conread position: 4-756
Cow position: chr22:12431319-12430567 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 382

Conread position: 4-761
Cow position: chr22:12399507-12398750 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 32

Conread position: 4-763
Cow position: chr22:12458523-12457764 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-763
Cow position: chr22:46654098-46654858 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 4-764
Cow position: chr22:12419211-12418434 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 651

Conread position: 4-769
Cow position: chr22:12476052-12475287 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 136

Conread position: 4-769
Cow position: chr22:12499207-12499972 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 129

Conread position: 4-793
Cow position: chr22:12431403-12430614 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 4-797
Cow position: chr22:12399675-12398882 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 133

Conread position: 4-797
Cow position: chr22:14429815-14430608 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 4-800
Cow position: chr22:14430235-14431024 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 203

Conread position: 4-807
Cow position: chr22:12399591-12398788 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 203

Conread position: 4-830
Cow position: chr22:12431991-12431165 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 204

Conread position: 4-836
Cow position: chr22:12431571-12430739 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 203

Conread position: 4-836
Cow position: chr22:12432159-12431327 (view UCSC Genome Browser custom track)
Alignm length: 841
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 80

Conread position: 4-838
Cow position: chr22:12431739-12430905 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 381

Conread position: 4-838
Cow position: chr22:12476136-12475302 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 203

Conread position: 4-838
Cow position: chr22:12476304-12475470 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 203

Conread position: 4-838
Cow position: chr22:12498955-12499789 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 203

Conread position: 4-845
Cow position: chr22:12431487-12430646 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 134

Conread position: 4-846
Cow position: chr22:12499123-12499965 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 35

Conread position: 4-857
Cow position: chr22:12432327-12431475 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 134

Conread position: 4-857
Cow position: chr22:12476220-12475368 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 207

Conread position: 4-857
Cow position: chr22:12499039-12499891 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 222

Conread position: 4-870
Cow position: chr22:12432411-12431549 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 44

Conread position: 4-871
Cow position: chr22:12431907-12431044 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 207

Conread position: 5-748
Cow position: chr22:11640692-11641433 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 309

Conread position: 5-761
Cow position: chr22:12385666-12384908 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 54

Conread position: 5-797
Cow position: chr22:14467977-14468759 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 139

Conread position: 5-846
Cow position: chr22:12458606-12457765 (view UCSC Genome Browser custom track)
Alignm length: 843
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 201

Conread position: 5-857
Cow position: chr22:12431822-12430971 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 5-857
Cow position: chr22:12498872-12499723 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 157

Conread position: 5-870
Cow position: chr22:12476387-12475526 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 157

Conread position: 6-556
Cow position: chr22:12544752-12545302 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 330
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 65

Conread position: 6-681
Cow position: chr22:12458437-12457762 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 375

Conread position: 6-856
Cow position: chr22:12399757-12398908 (view UCSC Genome Browser custom track)
Alignm length: 860
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 116

Conread position: 7-797
Cow position: chr22:14429650-14430440 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 49

Conread position: 7-804
Cow position: chr22:46654017-46654814 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 297

Conread position: 9-348
Cow position: chr22:11666621-11666960 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 43

Conread position: 9-428
Cow position: chr22:11701275-11701694 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 278
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 25, 40

Conread position: 9-838
Cow position: chr22:12399838-12399009 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 455, 467

Conread position: 17-511
Cow position: chr22:11666461-11666955 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 125

Conread position: 17-549
Cow position: chr22:11701115-11701648 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 125

Conread position: 55-870
Cow position: chr22:12432444-12431633 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 39

Conread position: 66-830
Cow position: chr22:12385689-12384923 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 136

Conread position: 66-831
Cow position: chr22:12476410-12475645 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 208

Conread position: 66-831
Cow position: chr22:12498849-12499614 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 208

Conread position: 67-797
Cow position: chr22:11640670-11641400 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 140

Conread position: 76-857
Cow position: chr22:46654002-46654782 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 135

Conread position: 96-549
Cow position: chr22:11666456-11666910 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 111

Conread position: 96-680
Cow position: chr22:11701110-11701694 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 111

Conread position: 96-697
Cow position: chr22:12419018-12418419 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 533

Conread position: 97-797
Cow position: chr22:14429656-14430356 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 97-798
Cow position: chr22:12544591-12545292 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 406
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 139, 126

Conread position: 98-838
Cow position: chr22:12476462-12475722 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 98-838
Cow position: chr22:12498797-12499537 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 100-797
Cow position: chr22:14441889-14442586 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 412
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 38

Conread position: 109-802
Cow position: chr22:11640628-11641321 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 109-838
Cow position: chr22:12399900-12399177 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 29

Conread position: 135-838
Cow position: chr22:12432448-12431745 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 95

Conread position: 141-412
Cow position: chr22:12545616-12545887 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 142-846
Cow position: chr22:46653984-46654688 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 90

Conread position: 149-838
Cow position: chr22:12419318-12418612 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 519

Conread position: 150-796
Cow position: chr22:14467954-14468600 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 56

Conread position: 152-831
Cow position: chr22:12458627-12457948 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 499

Conread position: 159-798
Cow position: chr22:14442032-14442668 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 378
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 167, 151

Conread position: 166-800
Cow position: chr22:14429641-14430275 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 299

Conread position: 186-629
Cow position: chr22:11666462-11666905 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 197

Conread position: 187-800
Cow position: chr22:14441892-14442505 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 371
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 20

Conread position: 193-857
Cow position: chr22:11640628-11641291 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 11

Conread position: 212-801
Cow position: chr22:14429599-14430192 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 100

Conread position: 240-797
Cow position: chr22:14429463-14430020 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 12

Conread position: 240-863
Cow position: chr22:12545630-12546247 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 384
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 11, 285

Conread position: 241-797
Cow position: chr22:14467961-14468517 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 321

Conread position: 252-768
Cow position: chr22:11666444-11666960 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 327
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 127, 133

Conread position: 259-797
Cow position: chr22:11701105-11701643 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 126

Conread position: 259-798
Cow position: chr22:12432492-12431953 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 139

Conread position: 309-544
Cow position: chr22:12545616-12545852 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 19

Conread position: 309-797
Cow position: chr22:11666417-11666905 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 167

Conread position: 319-800
Cow position: chr22:14467955-14468436 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 158

Conread position: 320-832
Cow position: chr22:12458627-12458115 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 155

Conread position: 341-836
Cow position: chr22:12432494-12431999 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 209

Conread position: 343-817
Cow position: chr22:46653933-46654407 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 288
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 194, 202

Conread position: 348-831
Cow position: chr22:11701110-11701593 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 207

Conread position: 349-871
Cow position: chr22:11640616-11641134 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 52

Conread position: 401-837
Cow position: chr22:12385690-12385252 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 427-846
Cow position: chr22:12399918-12399505 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 53

Conread position: 480-846
Cow position: chr22:12458635-12458269 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 176, 158

Conread position: 486-798
Cow position: chr22:14467954-14468266 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 200
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 169, 149

Conread position: 577-871
Cow position: chr22:12458622-12458332 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 190
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 276, 0

Show alignments to all cow chromosomes.