Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 4-332 |
| Cow position: | chr23:25724042-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 218, 223 |
| Conread position: | 4-414 |
| Cow position: | chr23:24654118-24654522 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 137, 133 |
| Conread position: | 4-416 |
| Cow position: | chr23:25698487-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 4-429 |
| Cow position: | chr23:25626616-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 134 |
| Conread position: | 4-443 |
| Cow position: | chr23:25660320-25660759 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-447 |
| Cow position: | chr23:24626309-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 4-461 |
| Cow position: | chr23:25698571-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 248, 263 |
| Conread position: | 4-508 |
| Cow position: | chr23:25660236-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 470 |
| Conread position: | 4-544 |
| Cow position: | chr23:24535960-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 4-649 |
| Cow position: | chr23:24522814-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 4-672 |
| Cow position: | chr23:24547329-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 203 |
| Conread position: | 4-761 |
| Cow position: | chr23:24560889-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-782 |
| Cow position: | chr23:24639301-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 4-783 |
| Cow position: | chr23:24560805-24560025 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 4-836 |
| Cow position: | chr23:25626199-25627028 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 4-855 |
| Cow position: | chr23:25626031-25626878 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 7-563 |
| Cow position: | chr23:24536041-24535485 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 465 |
| Conread position: | 10-869 |
| Cow position: | chr23:25626121-25626973 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 430 |
| Conread position: | 12-846 |
| Cow position: | chr23:24639225-24640059 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 13-355 |
| Cow position: | chr23:24654043-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-573 |
| Cow position: | chr23:25698645-25698086 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 337 |
| Conread position: | 19-598 |
| Cow position: | chr23:25660167-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 188 |
| Conread position: | 25-416 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 58-531 |
| Cow position: | chr23:24626279-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 66-829 |
| Cow position: | chr23:25626009-25626769 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 67-836 |
| Cow position: | chr23:24560910-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 147 |
| Conread position: | 85-797 |
| Cow position: | chr23:24639214-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 96-450 |
| Cow position: | chr23:24654042-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 110 |
| Conread position: | 97-752 |
| Cow position: | chr23:24547320-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 286 |
| Conread position: | 103-501 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 108 |
| Conread position: | 103-682 |
| Cow position: | chr23:25660167-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 542 |
| Conread position: | 103-713 |
| Cow position: | chr23:24536029-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 452 |
| Conread position: | 139-615 |
| Cow position: | chr23:24626276-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 172-802 |
| Cow position: | chr23:24522814-24522189 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 24 |
| Conread position: | 172-832 |
| Cow position: | chr23:24547329-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 177-452 |
| Cow position: | chr23:24521972-24521697 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 201, 217 |
| Conread position: | 180-503 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 272 |
| Conread position: | 187-760 |
| Cow position: | chr23:25660167-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 193-551 |
| Cow position: | chr23:25724105-25723747 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 221-699 |
| Cow position: | chr23:24626274-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 221-783 |
| Cow position: | chr23:24626202-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 222-855 |
| Cow position: | chr23:25625997-25626626 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 257 |
| Conread position: | 226-836 |
| Cow position: | chr23:25698685-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 256-838 |
| Cow position: | chr23:24547329-24546747 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 264-598 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-836 |
| Cow position: | chr23:24536032-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 136 |
| Conread position: | 268-838 |
| Cow position: | chr23:25660164-25660734 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 543 |
| Conread position: | 271-659 |
| Cow position: | chr23:25724111-25723723 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 308-801 |
| Cow position: | chr23:25625999-25626492 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 309-797 |
| Cow position: | chr23:25698686-25698198 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 94, 90 |
| Conread position: | 320-838 |
| Cow position: | chr23:24639197-24639715 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 334-836 |
| Cow position: | chr23:25660146-25660648 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-832 |
| Cow position: | chr23:24522814-24522327 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 348-691 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 188, 196 |
| Conread position: | 361-752 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 294, 273 |
| Conread position: | 418-832 |
| Cow position: | chr23:24626303-24626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 427-832 |
| Cow position: | chr23:24536041-24535636 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-755 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-799 |
| Cow position: | chr23:25625961-25626322 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 443-836 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 486-836 |
| Cow position: | chr23:24522754-24522407 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 182, 152 |
| Conread position: | 486-857 |
| Cow position: | chr23:24626287-24626657 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 497-869 |
| Cow position: | chr23:24522825-24522462 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 501-798 |
| Cow position: | chr23:25660145-25660442 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 160, 167 |
| Conread position: | 517-838 |
| Cow position: | chr23:24654043-24654364 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 529-838 |
| Cow position: | chr23:25724105-25723796 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 560-857 |
| Cow position: | chr23:24626277-24626573 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 587-847 |
| Cow position: | chr23:25698660-25698400 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 607-832 |
| Cow position: | chr23:25724111-25723886 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.