Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 4-352 |
| Cow position: | chr24:17070711-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 217, 196 |
| Conread position: | 4-433 |
| Cow position: | chr24:17070627-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 203 |
| Conread position: | 4-503 |
| Cow position: | chr24:17070543-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 199 |
| Conread position: | 4-616 |
| Cow position: | chr24:17078093-17077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 4-757 |
| Cow position: | chr24:17078261-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 395 |
| Conread position: | 4-768 |
| Cow position: | chr24:17035790-17035026 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 565 |
| Conread position: | 4-777 |
| Cow position: | chr24:17035706-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 395 |
| Conread position: | 4-792 |
| Cow position: | chr24:17036126-17035338 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 203 |
| Conread position: | 4-831 |
| Cow position: | chr24:17036294-17035467 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-832 |
| Cow position: | chr24:17036210-17035382 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 204 |
| Conread position: | 4-832 |
| Cow position: | chr24:17036378-17035550 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-838 |
| Cow position: | chr24:17036042-17035208 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 731, 736 |
| Conread position: | 4-845 |
| Cow position: | chr24:17035958-17035117 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 539, 533 |
| Conread position: | 4-846 |
| Cow position: | chr24:17035874-17035032 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 270 |
| Conread position: | 4-856 |
| Cow position: | chr24:17036462-17035611 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 271 |
| Conread position: | 4-857 |
| Cow position: | chr24:17036546-17035694 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 843, 0 |
| Conread position: | 5-357 |
| Cow position: | chr24:17013165-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 338, 0 |
| Conread position: | 13-607 |
| Cow position: | chr24:17070468-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-685 |
| Cow position: | chr24:17070426-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 66-836 |
| Cow position: | chr24:17078283-17077513 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 697, 704 |
| Conread position: | 71-450 |
| Cow position: | chr24:17013147-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 107-303 |
| Cow position: | chr24:16986449-16986645 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 141-837 |
| Cow position: | chr24:17078292-17077596 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 426 |
| Conread position: | 159-755 |
| Cow position: | chr24:17070446-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-545 |
| Cow position: | chr24:17013167-17013536 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 142, 129 |
| Conread position: | 187-382 |
| Cow position: | chr24:16986445-16986640 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 99 |
| Conread position: | 226-852 |
| Cow position: | chr24:17078291-17077665 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-857 |
| Cow position: | chr24:17078365-17077745 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 241-862 |
| Cow position: | chr24:17070444-17071064 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 605, 0 |
| Conread position: | 257-463 |
| Cow position: | chr24:16986431-16986637 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 138, 111 |
| Conread position: | 266-550 |
| Cow position: | chr24:17013174-17013458 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 129, 116 |
| Conread position: | 341-702 |
| Cow position: | chr24:17013165-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 147, 133 |
| Conread position: | 352-857 |
| Cow position: | chr24:17070387-17070891 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 425-786 |
| Cow position: | chr24:17013165-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 231, 226 |
| Conread position: | 493-832 |
| Cow position: | chr24:17013149-17013488 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 523-733 |
| Cow position: | chr24:16986445-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 593-838 |
| Cow position: | chr24:17013165-17013410 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-802 |
| Cow position: | chr24:16986444-16986640 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 120, 113 |
Show alignments to all cow chromosomes.