Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 1-461 |
| Cow position: | chr28:34679563-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 4-360 |
| Cow position: | chr28:7810591-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 4-404 |
| Cow position: | chr28:33210228-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 4-429 |
| Cow position: | chr28:9253187-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 4-457 |
| Cow position: | chr28:34696080-34696533 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 4-503 |
| Cow position: | chr28:9253103-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 4-527 |
| Cow position: | chr28:7810432-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 4-533 |
| Cow position: | chr28:9290172-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 4-563 |
| Cow position: | chr28:34695996-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 340 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 4-774 |
| Cow position: | chr28:9298817-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 4-787 |
| Cow position: | chr28:11334137-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 453 |
| Conread position: | 4-792 |
| Cow position: | chr28:9298401-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 4-837 |
| Cow position: | chr28:9298734-9299550 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 4-838 |
| Cow position: | chr28:7757416-7758250 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 4-839 |
| Cow position: | chr28:7757500-7758335 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 4-839 |
| Cow position: | chr28:7758088-7758907 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 5-453 |
| Cow position: | chr28:34673440-34673888 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 5-604 |
| Cow position: | chr28:9290089-9290682 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 5-796 |
| Cow position: | chr28:9289841-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 6-854 |
| Cow position: | chr28:7758006-7758837 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 7-713 |
| Cow position: | chr28:9252938-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 7-870 |
| Cow position: | chr28:7757755-7758598 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 10-832 |
| Cow position: | chr28:9252775-9253595 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 13-550 |
| Cow position: | chr28:34673364-34673901 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-696 |
| Cow position: | chr28:7810285-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 66-755 |
| Cow position: | chr28:9252912-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 71-846 |
| Cow position: | chr28:11334154-11333385 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 686, 0 |
| Conread position: | 86-817 |
| Cow position: | chr28:11334223-11333492 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 210 |
| Conread position: | 95-621 |
| Cow position: | chr28:34673362-34673888 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 132, 119 |
| Conread position: | 96-832 |
| Cow position: | chr28:7757340-7758076 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 188 |
| Conread position: | 149-780 |
| Cow position: | chr28:7810325-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 162 |
| Conread position: | 149-857 |
| Cow position: | chr28:9289817-9290514 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 163-797 |
| Cow position: | chr28:34695903-34696537 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 171-572 |
| Cow position: | chr28:33210227-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 186-836 |
| Cow position: | chr28:34695842-34696492 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 394 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 144, 126 |
| Conread position: | 208-754 |
| Cow position: | chr28:34679607-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 353 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 218-868 |
| Cow position: | chr28:7810310-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 74 |
| Conread position: | 231-826 |
| Cow position: | chr28:34695719-34696310 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 360 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 232-838 |
| Cow position: | chr28:7757392-7757998 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 239-849 |
| Cow position: | chr28:9289739-9290341 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 244, 144 |
| Conread position: | 242-832 |
| Cow position: | chr28:9298387-9298973 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 245-838 |
| Cow position: | chr28:9252593-9253181 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 362 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 134, 151 |
| Conread position: | 256-620 |
| Cow position: | chr28:33210228-33210593 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 259-857 |
| Cow position: | chr28:7757335-7757932 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 204 |
| Conread position: | 263-832 |
| Cow position: | chr28:34673362-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 329-831 |
| Cow position: | chr28:9298556-9299054 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 111 |
| Conread position: | 339-716 |
| Cow position: | chr28:33210227-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 342-838 |
| Cow position: | chr28:7757334-7757830 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 134 |
| Conread position: | 361-857 |
| Cow position: | chr28:7810285-7810771 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 109 |
| Conread position: | 423-791 |
| Cow position: | chr28:33210227-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 227, 215 |
| Conread position: | 507-836 |
| Cow position: | chr28:33210227-33210556 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.