Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 1-681 |
| Cow position: | chr3:62722246-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 4-244 |
| Cow position: | chr3:68027512-68027752 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 128 |
| Conread position: | 4-656 |
| Cow position: | chr3:68027092-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 4-670 |
| Cow position: | chr3:68045685-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 4-716 |
| Cow position: | chr3:62742777-62743468 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 125 |
| Conread position: | 4-792 |
| Cow position: | chr3:77351239-77350473 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 493 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 4-799 |
| Cow position: | chr3:62742695-62743467 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 49 |
| Conread position: | 4-845 |
| Cow position: | chr3:62742362-62743177 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 87 |
| Conread position: | 6-748 |
| Cow position: | chr3:68027010-68027752 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 6-756 |
| Cow position: | chr3:62722323-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 7-752 |
| Cow position: | chr3:68045605-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 6 |
| Conread position: | 13-870 |
| Cow position: | chr3:62742539-62743366 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 102 |
| Conread position: | 57-846 |
| Cow position: | chr3:62722357-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 74-824 |
| Cow position: | chr3:68026995-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 88-798 |
| Cow position: | chr3:62742277-62742984 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 91-827 |
| Cow position: | chr3:68045604-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 219 |
| Conread position: | 139-378 |
| Cow position: | chr3:16020412-16020177 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 93 |
| Conread position: | 143-794 |
| Cow position: | chr3:68045575-68046223 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 12 |
| Conread position: | 143-837 |
| Cow position: | chr3:77351269-77350586 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 426 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 161-421 |
| Cow position: | chr3:16020467-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 159, 51 |
| Conread position: | 215-857 |
| Cow position: | chr3:62742237-62742873 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 218-799 |
| Cow position: | chr3:68045563-68046144 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 176 |
| Conread position: | 226-857 |
| Cow position: | chr3:68027062-68027692 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 84 |
| Conread position: | 245-545 |
| Cow position: | chr3:16020467-16020177 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 220, 53 |
| Conread position: | 264-838 |
| Cow position: | chr3:68027016-68027590 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 308-870 |
| Cow position: | chr3:68045569-68046127 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 321-838 |
| Cow position: | chr3:68026990-68027506 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 489-846 |
| Cow position: | chr3:68026990-68027346 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 581-798 |
| Cow position: | chr3:16020390-16020177 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 581-840 |
| Cow position: | chr3:16020467-16020215 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 137, 51 |
Show alignments to all cow chromosomes.