Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 1-629 |
| Cow position: | chr7:18390159-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 393 |
| Conread position: | 1-738 |
| Cow position: | chr7:8243381-8244117 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 213 |
| Conread position: | 1-857 |
| Cow position: | chr7:1014522-1015371 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 725, 123 |
| Conread position: | 2-797 |
| Cow position: | chr7:8324815-8325610 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 4-390 |
| Cow position: | chr7:11434648-11434269 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 232, 109 |
| Conread position: | 4-467 |
| Cow position: | chr7:8325657-8326120 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 4-508 |
| Cow position: | chr7:11600935-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 0 |
| Conread position: | 4-545 |
| Cow position: | chr7:11601019-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-620 |
| Cow position: | chr7:11601103-11600487 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 214 |
| Conread position: | 4-713 |
| Cow position: | chr7:1014771-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 112 |
| Conread position: | 4-713 |
| Cow position: | chr7:18390078-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 208 |
| Conread position: | 4-727 |
| Cow position: | chr7:1439554-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 4-733 |
| Cow position: | chr7:42878940-42878210 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 4-763 |
| Cow position: | chr7:3180117-3180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 4-795 |
| Cow position: | chr7:8277260-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 4-796 |
| Cow position: | chr7:8242883-8243674 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 4-797 |
| Cow position: | chr7:8325321-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 222 |
| Conread position: | 4-799 |
| Cow position: | chr7:8242967-8243761 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 160 |
| Conread position: | 4-801 |
| Cow position: | chr7:8243051-8243847 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 4-801 |
| Cow position: | chr7:8325153-8325950 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 4-802 |
| Cow position: | chr7:8277428-8278226 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 146 |
| Conread position: | 4-802 |
| Cow position: | chr7:8277680-8278476 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 156 |
| Conread position: | 4-832 |
| Cow position: | chr7:1014273-1015095 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 4-838 |
| Cow position: | chr7:3179781-3180615 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 4-838 |
| Cow position: | chr7:3179865-3180699 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 4-838 |
| Cow position: | chr7:3179949-3180783 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 4-838 |
| Cow position: | chr7:42879108-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 4-838 |
| Cow position: | chr7:42879276-42878442 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 4-857 |
| Cow position: | chr7:8243219-8244068 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 133 |
| Conread position: | 4-870 |
| Cow position: | chr7:8325069-8325931 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 160 |
| Conread position: | 5-797 |
| Cow position: | chr7:1014688-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 5-797 |
| Cow position: | chr7:18389995-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 127 |
| Conread position: | 6-544 |
| Cow position: | chr7:8278186-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 6-760 |
| Cow position: | chr7:11601185-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 115 |
| Conread position: | 6-804 |
| Cow position: | chr7:8324735-8325533 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 208 |
| Conread position: | 6-805 |
| Cow position: | chr7:1439472-1440271 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 123 |
| Conread position: | 7-832 |
| Cow position: | chr7:42879189-42878364 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 301 |
| Conread position: | 7-856 |
| Cow position: | chr7:42879442-42878593 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 9-803 |
| Cow position: | chr7:8325242-8326036 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 141 |
| Conread position: | 49-838 |
| Cow position: | chr7:3179656-3180447 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 51-830 |
| Cow position: | chr7:42879312-42878534 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 55-798 |
| Cow position: | chr7:1437967-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 438 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 6, 98 |
| Conread position: | 63-838 |
| Cow position: | chr7:11601212-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 65-816 |
| Cow position: | chr7:1439447-1440196 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 66-812 |
| Cow position: | chr7:3179759-3180506 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 141 |
| Conread position: | 70-847 |
| Cow position: | chr7:1014669-1015446 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 492 |
| Conread position: | 74-352 |
| Cow position: | chr7:11434501-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 88-797 |
| Cow position: | chr7:8277260-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 88-802 |
| Cow position: | chr7:11434970-11434277 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 136 |
| Conread position: | 95-637 |
| Cow position: | chr7:11434809-11434274 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 95-797 |
| Cow position: | chr7:8242806-8243507 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 149-799 |
| Cow position: | chr7:11601210-11600560 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-857 |
| Cow position: | chr7:1439448-1440154 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 157-856 |
| Cow position: | chr7:1014258-1014950 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 177-836 |
| Cow position: | chr7:18389999-18390658 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 385 |
| Conread position: | 240-857 |
| Cow position: | chr7:11601286-11600671 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 241-857 |
| Cow position: | chr7:11601202-11600587 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 393 |
| Conread position: | 252-797 |
| Cow position: | chr7:8277256-8277801 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 151 |
| Conread position: | 262-797 |
| Cow position: | chr7:8242805-8243340 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 264-857 |
| Cow position: | chr7:1438091-1438681 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 348 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 139, 105 |
| Conread position: | 265-860 |
| Cow position: | chr7:3179706-3180300 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 214 |
| Conread position: | 336-804 |
| Cow position: | chr7:8277256-8277724 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 341-832 |
| Cow position: | chr7:18389995-18390486 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 345-797 |
| Cow position: | chr7:8242804-8243256 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 297 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 425-836 |
| Cow position: | chr7:18389995-18390406 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 139, 129 |
| Conread position: | 429-801 |
| Cow position: | chr7:8242804-8243176 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 122, 135 |
| Conread position: | 509-838 |
| Cow position: | chr7:18389995-18390324 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 231, 208 |
Show alignments to all cow chromosomes.