Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M03.5 |
| Conread position: | 4-412 |
| Cow position: | chrX:29045827-29045419 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 4-526 |
| Cow position: | chrX:29045176-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 4-545 |
| Cow position: | chrX:13826780-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 226, 203 |
| Conread position: | 4-603 |
| Cow position: | chrX:29045260-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 307 |
| Conread position: | 4-620 |
| Cow position: | chrX:14181558-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 4-714 |
| Cow position: | chrX:12627355-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 4-775 |
| Cow position: | chrX:25324999-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 4-785 |
| Cow position: | chrX:25309806-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 139 |
| Conread position: | 4-832 |
| Cow position: | chrX:25325167-25324339 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 4-832 |
| Cow position: | chrX:25325419-25324591 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 270 |
| Conread position: | 4-838 |
| Cow position: | chrX:25325083-25324249 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 296 |
| Conread position: | 4-838 |
| Cow position: | chrX:25325251-25324417 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 4-838 |
| Cow position: | chrX:25325587-25324753 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 215 |
| Conread position: | 4-856 |
| Cow position: | chrX:25325335-25324484 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 4-856 |
| Cow position: | chrX:25325755-25324904 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 4-857 |
| Cow position: | chrX:25325671-25324819 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 5-832 |
| Cow position: | chrX:25309725-25310550 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 5-838 |
| Cow position: | chrX:25325502-25324669 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 6-469 |
| Cow position: | chrX:12627608-12628070 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 115, 60 |
| Conread position: | 7-838 |
| Cow position: | chrX:25325837-25325005 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 32 |
| Conread position: | 12-691 |
| Cow position: | chrX:29045336-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 12-798 |
| Cow position: | chrX:12627279-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 144 |
| Conread position: | 59-837 |
| Cow position: | chrX:25309693-25310471 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 419 |
| Conread position: | 67-629 |
| Cow position: | chrX:13826801-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 343 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 95-838 |
| Cow position: | chrX:25325832-25325089 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 179 |
| Conread position: | 99-778 |
| Cow position: | chrX:29045333-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 107-797 |
| Cow position: | chrX:13826929-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 141-832 |
| Cow position: | chrX:29045774-29045104 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 170 |
| Conread position: | 143-838 |
| Cow position: | chrX:25325868-25325173 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 74 |
| Conread position: | 155-573 |
| Cow position: | chrX:29045844-29045426 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 145, 156 |
| Conread position: | 162-832 |
| Cow position: | chrX:29045351-29044684 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 256-793 |
| Cow position: | chrX:12627271-12627806 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 139 |
| Conread position: | 271-797 |
| Cow position: | chrX:13826933-13826407 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 320-838 |
| Cow position: | chrX:29045361-29044846 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 330-715 |
| Cow position: | chrX:29045837-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-841 |
| Cow position: | chrX:29045832-29045410 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 142 |
| Conread position: | 433-799 |
| Cow position: | chrX:12627280-12627645 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 146 |
| Conread position: | 498-838 |
| Cow position: | chrX:29045837-29045497 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 70 |
Show alignments to all cow chromosomes.